| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g04069 | 3:7,852,902-7,856,449 | + | C2H3g07700 | CX3g026311 | LOC_Os03g16110 | Os03g0268000 | - | Detail |
| C1H3g00060 | 3:7,861,163-7,864,757 | - | C2H3g30042 | CX3g028752 | LOC_Os03g16120 | Os03g0268100 | - | Detail |
| C1H3g17480 | 3:7,867,388-7,873,049 | - | C2H3g28116 | CX3g026518 | LOC_Os03g16130 | Os03g0268200 | - | Detail |
| C1H3g03581 | 3:7,874,585-7,877,206 | - | C2H3g23231 | CX3g027084 | LOC_Os03g16140 | Os03g0268300 | - | Detail |
| C1H3g26709 | 3:7,880,790-7,884,197 | - | C2H3g04060 | CX3g026984 | LOC_Os03g16150 | Os03g0268400 | - | Detail |
| C1H3g06011 | 3:7,895,531-7,897,545 | - | C2H3g09098 | CX3g029114 | LOC_Os03g16170 | Os03g0268600 | - | Detail |
| C1H3g13406 | 3:7,910,047-7,910,457 | - | - | CX3g025828 | - | - | - | Detail |
| C1H3g02392 | 3:7,911,136-7,913,409 | - | C2H3g08488 | CX3g025893 | LOC_Os03g16210 | Os03g0268900 | - | Detail |
| C1H3g25433 | 3:7,916,576-7,918,948 | - | C2H3g11149 | CX3g025893 | LOC_Os03g16220 | Os03g0269000 | - | Detail |
| C1H3g14634 | 3:7,921,134-7,922,833 | - | C2H3g13848 | CX3g030778 | LOC_Os03g16230 | Os03g0269100 | - | Detail |
| C1H3g28190 | 3:7,923,607-7,926,443 | - | C2H3g30194 | CX3g025228 | LOC_Os03g16260 | Os03g0269300 | - | Detail |
| C1H3g05319 | 3:7,932,422-7,938,151 | + | C2H3g10990 | CX3g030432 | LOC_Os03g16290 | Os03g0269700 | OsSSR1 | Detail |
| C1H3g25495 | 3:7,939,994-7,944,266 | + | C2H3g12278 | CX3g028676 | LOC_Os03g16334 | Os03g0269900 | - | Detail |
| C1H3g15219 | 3:7,949,670-7,950,446 | + | C2H3g26039 | CX3g030836 | LOC_Os03g16350 | Os03g0270000 | OsAHL7 | Detail |
| C1H3g02158 | 3:7,957,906-7,964,213 | - | C2H3g09590 | - | LOC_Os03g16369 | Os03g0270200 | - | Detail |
| C1H3g05957 | 3:7,961,121-7,961,549 | + | C2H3g23864 | CX3g031331 | - | Os03g0270300 | - | Detail |
| C1H3g05634 | 3:7,968,821-7,970,242 | - | C2H3g17998 | CX3g029608 | LOC_Os03g16390 | Os03g0270500 | - | Detail |
| C1H3g18450 | 3:7,974,389-7,978,225 | + | C2H3g10987 | CX3g031177 | LOC_Os03g16400 | Os01g0103800 | - | Detail |
| C1H3g20566 | 3:7,978,663-7,979,136 | - | C2H3g15886 | CX3g029680 | LOC_Os03g16410 | Os03g0270800 | - | Detail |
| C1H3g15183 | 3:7,982,072-7,985,245 | + | C2H3g30308 | CX3g026903 | LOC_Os03g16430 | Os03g0271100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H8g21066 | 8:20,294,440-20,298,567 | + | C1H8g07271 | CX8g054252 | LOC_Os08g37820 | Os08g0484800 | - | Detail |
| C2H8g02429 | 8:20,305,319-20,306,308 | - | - | - | LOC_Os08g37840 | Os08g0485000 | - | Detail |
| C2H8g11309 | 8:20,316,438-20,323,570 | + | C1H8g08354 | CX8g054237 | LOC_Os08g37874 | Os08g0485400 | - | Detail |
| C2H8g09800 | 8:20,327,851-20,328,311 | + | C1H8g24443 | CX8g050461 | LOC_Os08g37890 | Os08g0485500 | RAE2, OsEPFL1, EPFL1, GAD1 | Detail |
| C2H8g22834 | 8:20,331,886-20,337,354 | + | C1H8g08175 | CX8g054267 | LOC_Os08g37904 | Os08g0485600 | - | Detail |
| C2H8g11998 | 8:20,345,869-20,352,164 | + | C1H8g13898 | CX8g053049 | LOC_Os08g37920 | Os08g0485700 | - | Detail |
| C2H8g20917 | 8:20,353,093-20,355,855 | - | C1H8g11808 | CX8g053483 | LOC_Os08g37930 | Os08g0485800 | - | Detail |
| C2H8g01955 | 8:20,357,441-20,360,495 | - | C1H8g21083 | CX8g052013 | LOC_Os08g37940 | Os08g0485900 | - | Detail |
| C2H8g06885 | 8:20,362,408-20,370,645 | + | C1H8g12876 | CX8g054609 | LOC_Os08g37950 | Os08g0486100 | - | Detail |
| C2H8g17660 | 8:20,371,756-20,374,662 | - | C1H8g09919 | CX8g050748 | LOC_Os08g37960 | Os08g0486200 | - | Detail |
| C2H8g28570 | 8:20,383,371-20,384,904 | - | C1H8g05150 | CX8g052173 | LOC_Os08g37970 | Os08g0486300 | Os2R_MYB80 | Detail |
| C2H8g10262 | 8:20,400,922-20,401,419 | + | C1H9g18707 | CX8g052825 | LOC_Os08g37990 | Os08g0486700 | - | Detail |
| C2H8g22845 | 8:20,405,636-20,408,083 | + | C1H8g06962 | CX8g052559 | LOC_Os08g38010 | Os08g0487000 | - | Detail |
| C2H8g02123 | 8:20,410,265-20,410,954 | - | C1H8g07010 | CX8g053523 | LOC_Os08g38020 | Os08g0487100 | - | Detail |
| C2H8g17510 | 8:20,427,743-20,430,762 | - | C1H8g09056 | CX8g053173 | LOC_Os08g38060 | Os08g0487500 | - | Detail |
| C2H8g21912 | 8:20,437,235-20,439,233 | + | C1H8g03415 | CX8g054700 | LOC_Os08g38080 | Os08g0487700 | - | Detail |
| C2H8g01365 | 8:20,440,173-20,444,679 | - | C1H8g23582 | CX8g051291 | LOC_Os08g38086 | Os08g0487800 | - | Detail |
| C2H8g04096 | 8:20,445,612-20,449,097 | - | C1H8g16452 | CX8g051898 | LOC_Os08g38092 | Os08g0487900 | - | Detail |
| C2H8g24896 | 8:20,456,733-20,458,202 | + | C1H8g23496 | CX8g051261 | LOC_Os08g38110 | Os08g0489100 | - | Detail |
| C2H8g03266 | 8:20,466,541-20,467,333 | - | - | CX8g053079 | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |