| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g17162 | 3:7,605,121-7,605,828 | + | C2H3g04568 | CX3g029077 | LOC_Os03g15630 | Os03g0262700 | - | Detail |
| C1H3g28720 | 3:7,610,593-7,615,998 | + | C2H3g27525 | CX3g031108 | LOC_Os03g15650 | Os03g0262900 | GLUP6/GEF, OsVPS9A, VPS9a, GPA2/VPS9a, GPA2, GLUP6 | Detail |
| C1H3g05394 | 3:7,617,326-7,618,087 | - | C2H3g13896 | CX3g028305 | LOC_Os03g15660 | Os03g0263000 | - | Detail |
| C1H3g03212 | 3:7,636,151-7,637,899 | + | C2H3g08920 | CX3g027760 | LOC_Os03g15680 | Os03g0263300 | NSP2, Os NSP2, NSP2 | Detail |
| C1H3g04873 | 3:7,641,156-7,644,889 | + | C2H3g28518 | CX3g028003 | LOC_Os03g15690 | Os03g0263400 | - | Detail |
| C1H3g22836 | 3:7,645,217-7,647,921 | - | C2H3g08217 | CX3g030022 | LOC_Os03g15700 | Os03g0263500 | - | Detail |
| C1H3g14620 | 3:7,649,425-7,651,004 | - | C2H3g20978 | CX3g031268 | LOC_Os03g15710 | Os03g0263600 | OsSTRL2 | Detail |
| C1H3g20320 | 3:7,652,738-7,655,214 | + | C2H3g30231 | CX3g028260 | LOC_Os03g15720 | Os03g0263700 | - | Detail |
| C1H3g15450 | 3:7,658,188-7,660,841 | + | C2H3g12908 | CX3g027745 | LOC_Os03g15730 | Os03g0263800 | - | Detail |
| C1H3g29175 | 3:7,664,084-7,666,630 | + | C2H3g16128 | CX3g026739 | LOC_Os03g15740 | Os03g0263900 | - | Detail |
| C1H3g24070 | 3:7,668,862-7,672,660 | - | C2H3g07359 | CX3g027842 | LOC_Os03g15750 | Os03g0264000 | - | Detail |
| C1H3g19617 | 3:7,680,014-7,684,027 | + | C2H3g24590 | CX3g030764 | LOC_Os03g15770 | Os03g0264300 | - | Detail |
| C1H3g02519 | 3:7,684,563-7,689,264 | - | C2H3g11898 | CX3g029488 | LOC_Os03g15780 | Os03g0264400 | - | Detail |
| C1H3g09016 | 3:7,693,794-7,695,167 | - | C2H3g27599 | CX3g027532 | LOC_Os03g15790 | Os03g0264600 | - | Detail |
| C1H3g19306 | 3:7,698,709-7,700,154 | - | C2H3g02876 | CX3g025411 | LOC_Os03g15800 | Os03g0264700 | - | Detail |
| C1H3g00653 | 3:7,700,729-7,708,709 | - | C2H3g07031 | CX3g030279 | LOC_Os03g15810 | Os03g0264800 | - | Detail |
| C1H3g22318 | 3:7,717,463-7,720,980 | + | C2H3g21284 | CX3g026411 | LOC_Os03g15840 | Os03g0265100 | PLS2, OsSQD2.3 | Detail |
| C1H3g16209 | 3:7,721,516-7,723,744 | - | C2H3g07665 | CX3g026305 | LOC_Os03g15850 | Os03g0265200 | - | Detail |
| C1H3g16456 | 3:7,726,714-7,729,733 | + | C2H3g25611 | CX3g029962 | LOC_Os03g15860 | Os03g0265300 | - | Detail |
| C1H3g27080 | 3:7,730,423-7,732,746 | + | C2H3g15049 | CX3g031298 | LOC_Os03g15870 | Os03g0265400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g13906 | 9:10,526,453-10,527,404 | + | C1H11g19220 | - | - | - | - | Detail |
| C2H9g09333 | 9:10,527,877-10,528,218 | + | C1H9g29795 | - | LOC_Os09g20490 | Os09g0371100 | - | Detail |
| C2H9g11466 | 9:10,530,032-10,531,134 | + | C1H9g15773 | - | LOC_Os09g20490 | Os09g0371100 | - | Detail |
| C2H9g23354 | 9:10,532,417-10,535,599 | + | C1H9g10150 | - | LOC_Os09g20500 | Os09g0371200 | - | Detail |
| C2H9g03171 | 9:10,536,862-10,539,182 | + | C1H9g30442 | - | LOC_Os09g20510 | Os09g0371100 | - | Detail |
| C2H9g13661 | 9:10,544,468-10,546,035 | + | C1H9g14290 | - | LOC_Os09g20520 | Os09g0371100 | - | Detail |
| C2H9g29737 | 9:10,554,477-10,560,684 | + | C1H9g13255 | CX9g056822 | LOC_Os09g20550 | Os09g0371700 | - | Detail |
| C2H9g20914 | 9:10,561,925-10,565,103 | + | C1H9g24353 | CX9g058116 | LOC_Os09g20560 | Os09g0371800 | - | Detail |
| C2H9g18955 | 9:10,585,786-10,591,397 | + | C1H9g04374 | CX9g056699 | LOC_Os09g20590 | Os09g0372400 | - | Detail |
| C2H9g10145 | 9:10,601,604-10,603,596 | + | C1H9g21178 | CX9g056705 | LOC_Os09g20630 | Os09g0372700 | - | Detail |
| C2H9g01317 | 9:10,604,395-10,607,685 | - | C1H9g28427 | CX9g057006 | LOC_Os09g20640 | Os09g0372800 | - | Detail |
| C2H9g10794 | 9:10,608,021-10,612,634 | + | C1H9g11515 | CX9g057473 | - | - | - | Detail |
| C2H9g13192 | 9:10,621,930-10,623,712 | - | C1H9g18641 | CX9g055929 | LOC_Os09g20660 | Os09g0373000 | - | Detail |
| C2H9g08105 | 9:10,630,837-10,639,896 | + | C1H9g22651 | CX9g055437 | LOC_Os09g20684 | Os09g0374900 | - | Detail |
| C2H9g08653 | 9:10,646,349-10,647,440 | + | C1H9g22651 | CX9g055662 | LOC_Os09g20684 | Os09g0374900 | - | Detail |
| C2H9g25240 | 9:10,652,624-10,653,133 | + | C1H9g24076 | CX9g055662 | LOC_Os09g20684 | Os09g0374900 | - | Detail |
| C2H9g05799 | 9:10,684,770-10,685,813 | - | C1H9g01978 | CX9g055547 | LOC_Os09g20740 | Os09g0373800 | - | Detail |
| C2H9g15195 | 9:10,690,096-10,691,348 | - | C1H9g05244 | CX9g055547 | LOC_Os09g20750 | - | - | Detail |
| C2H9g05168 | 9:10,718,725-10,722,433 | + | C1H9g03757 | CX9g055647 | LOC_Os09g20810 | Os09g0374900 | - | Detail |
| C2H9g15335 | 9:10,723,292-10,727,579 | - | C1H9g08490 | CX9g057566 | LOC_Os09g20820 | Os09g0375000 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |