| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g21569 | 3:6,970,786-6,972,487 | + | C2H3g26557 | CX3g029611 | LOC_Os03g14500 | Os03g0249100 | - | Detail |
| C1H3g23105 | 3:6,972,856-6,975,780 | + | C2H3g29515 | CX3g029820 | LOC_Os03g14510 | Os03g0249200 | - | Detail |
| C1H3g11399 | 3:6,979,679-6,982,658 | + | C2H3g01671 | CX3g027233 | LOC_Os03g14520 | Os03g0249300 | - | Detail |
| C1H3g07919 | 3:6,983,345-6,984,998 | + | C2H3g21948 | CX3g027067 | LOC_Os03g14530 | Os03g0249400 | - | Detail |
| C1H3g04860 | 3:6,987,775-6,989,229 | + | C2H3g26153 | CX3g026238 | LOC_Os03g14540 | Os03g0249500 | - | Detail |
| C1H3g27147 | 3:6,993,242-6,993,880 | + | C2H3g22650 | CX3g026981 | LOC_Os03g14550 | Os03g0760800 | GASR1, OsGASR1 | Detail |
| C1H3g11524 | 3:7,006,819-7,007,211 | - | C2H3g02802 | CX3g027321 | LOC_Os03g14570 | Os03g0249700 | - | Detail |
| C1H3g00105 | 3:7,011,187-7,013,601 | + | C2H3g12837 | CX3g026249 | LOC_Os03g14580 | Os03g0249900 | - | Detail |
| C1H3g21182 | 3:7,014,151-7,017,287 | - | C2H3g11625 | CX3g029360 | LOC_Os03g14590 | Os03g0250000 | - | Detail |
| C1H3g01522 | 3:7,019,726-7,024,773 | - | C2H3g05440 | CX3g030683 | LOC_Os03g14610 | Os03g0250200 | - | Detail |
| C1H3g02022 | 3:7,028,607-7,029,587 | - | C2H3g10452 | - | LOC_Os03g14615 | Os03g0250301 | - | Detail |
| C1H3g21317 | 3:7,037,267-7,037,656 | - | C2H3g28271 | CX3g028936 | LOC_Os03g14630 | Os03g0250400 | - | Detail |
| C1H3g06987 | 3:7,058,647-7,060,901 | - | C2H3g21148 | - | - | - | - | Detail |
| C1H3g07575 | 3:7,061,460-7,062,817 | - | C2H3g21148 | - | - | - | - | Detail |
| C1H3g24661 | 3:7,070,652-7,071,134 | - | - | - | LOC_Os03g14642 | Os03g0251000 | - | Detail |
| C1H3g21746 | 3:7,078,492-7,079,232 | - | C2H3g12224 | CX3g025713 | LOC_Os03g14669 | Os03g0251350 | OsHAP5C, OsNF-YC2 | Detail |
| C1H3g08441 | 3:7,083,335-7,092,190 | + | C2H3g01417 | CX3g029617 | LOC_Os03g14690 | Os03g0251500 | - | Detail |
| C1H3g08518 | 3:7,092,515-7,095,645 | - | C2H3g22211 | CX3g027601 | LOC_Os03g14700 | Os03g0251600 | OsC2DP29 | Detail |
| C1H3g13884 | 3:7,099,610-7,103,713 | + | C2H3g23862 | CX3g025283 | LOC_Os03g14710 | Os03g0251700 | - | Detail |
| C1H3g19434 | 3:7,104,641-7,108,221 | - | C2H3g08409 | CX3g029065 | LOC_Os03g14720 | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g02809 | 3:2,382,989-2,384,382 | - | C1H3g28897 | CX3g026711 | LOC_Os03g05530 | Os03g0149300 | - | Detail |
| C2H3g07135 | 3:2,384,709-2,385,099 | - | C1H3g28897 | CX3g026711 | LOC_Os03g05530 | Os03g0149300 | - | Detail |
| C2H3g29786 | 3:2,389,090-2,391,982 | + | C1H3g27908 | CX3g029578 | LOC_Os03g05540 | Os03g0149400 | - | Detail |
| C2H3g29884 | 3:2,395,079-2,395,626 | + | C1H3g00677 | - | - | - | - | Detail |
| C2H3g01040 | 3:2,400,513-2,401,439 | - | C1H3g00185 | CX3g030199 | LOC_Os03g05560 | Os03g0149700 | - | Detail |
| C2H3g29045 | 3:2,408,018-2,408,917 | - | C1H3g00155 | CX3g028233 | LOC_Os03g05570 | Os03g0149800 | - | Detail |
| C2H3g13096 | 3:2,424,730-2,425,155 | + | C1H3g19498 | CX3g030128 | LOC_Os03g05590 | Os03g0150200 | OsAP23 | Detail |
| C2H3g29028 | 3:2,427,358-2,428,983 | + | C1H3g28178 | CX3g030522 | LOC_Os03g05610 | Os03g0150500 | - | Detail |
| C2H3g30077 | 3:2,430,807-2,432,390 | - | C1H3g29432 | CX3g029750 | LOC_Os03g05620 | Os03g0150600 | - | Detail |
| C2H3g00543 | 3:2,434,580-2,435,837 | + | C1H3g22703 | - | LOC_Os03g05630 | Os03g0150700 | - | Detail |
| C2H3g05251 | 3:2,436,029-2,436,640 | + | C1H3g31371 | CX3g024968 | LOC_Os03g05630 | Os03g0150700 | - | Detail |
| C2H3g19570 | 3:2,444,751-2,445,075 | + | C1H3g21603 | - | - | Os03g0150700 | - | Detail |
| C2H3g28429 | 3:2,446,347-2,447,933 | - | C1H3g04203 | CX3g028575 | LOC_Os03g05640 | Os03g0150800 | PT2, OsPT2, PTH1-2, OsPht1;2 | Detail |
| C2H3g24713 | 3:2,452,468-2,457,529 | - | C1H3g13409 | CX3g030168 | LOC_Os03g05660 | Os03g0151100 | - | Detail |
| C2H3g23634 | 3:2,461,313-2,469,594 | + | C1H3g18077 | CX3g028756 | LOC_Os03g05680 | Os03g0151300 | Se14 | Detail |
| C2H3g25123 | 3:2,469,992-2,470,303 | - | C1H3g12618 | CX3g027574 | LOC_Os03g05700 | Os03g0151500 | - | Detail |
| C2H3g19949 | 3:2,472,091-2,472,774 | - | C1H3g18071 | CX3g029524 | LOC_Os03g05710 | Os03g0151600 | - | Detail |
| C2H3g16820 | 3:2,473,799-2,479,561 | + | C1H3g05811 | CX3g027544 | LOC_Os03g05720 | Os03g0151700 | - | Detail |
| C2H3g19649 | 3:2,480,098-2,484,362 | - | C1H3g17815 | CX3g029565 | LOC_Os03g05730 | Os03g0151800 | - | Detail |
| C2H3g15451 | 3:2,485,113-2,488,078 | - | C1H3g06798 | CX3g027324 | LOC_Os03g05740 | Os03g0151900 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |