| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g02167 | 3:6,541,432-6,544,627 | - | C2H3g18176 | CX3g030281 | LOC_Os03g13550 | Os03g0238700 | - | Detail |
| C1H3g21099 | 3:6,545,178-6,550,783 | - | C2H3g03887 | CX3g028158 | LOC_Os03g13560 | Os03g0238800 | - | Detail |
| C1H3g04969 | 3:6,556,174-6,559,275 | - | C2H3g08796 | CX3g027800 | LOC_Os03g13570 | Os03g0239000 | - | Detail |
| C1H3g08050 | 3:6,562,731-6,567,002 | + | C2H3g02771 | CX3g025956 | LOC_Os03g13590 | Os03g0239200 | - | Detail |
| C1H3g17605 | 3:6,568,644-6,569,375 | - | C2H3g14398 | CX3g028621 | LOC_Os03g13600 | Os03g0239300 | - | Detail |
| C1H3g02449 | 3:6,573,725-6,582,728 | - | C2H3g26731 | CX3g025599 | LOC_Os03g13614 | Os03g0239400 | - | Detail |
| C1H3g30005 | 3:6,588,137-6,590,770 | + | C2H3g26790 | CX3g025587 | LOC_Os03g13720 | Os03g0240400 | - | Detail |
| C1H3g14777 | 3:6,591,379-6,595,061 | - | C2H3g30457 | CX3g026273 | LOC_Os03g13730 | Os03g0240500 | - | Detail |
| C1H3g24877 | 3:6,596,841-6,598,178 | - | C2H3g18591 | CX3g029557 | LOC_Os03g13740 | Os03g0240600 | OsUPS | Detail |
| C1H3g17490 | 3:6,602,801-6,605,895 | - | C2H3g19605 | CX3g026950 | LOC_Os03g13750 | Os03g0240700 | - | Detail |
| C1H3g10474 | 3:6,606,090-6,608,820 | + | C2H3g24897 | CX3g031005 | LOC_Os03g13760 | Os03g0240800 | - | Detail |
| C1H3g03667 | 3:6,609,830-6,614,428 | - | C2H3g16324 | CX3g025683 | LOC_Os03g13770 | Os03g0240900 | - | Detail |
| C1H3g00374 | 3:6,615,957-6,622,351 | + | C2H3g26862 | CX3g026829 | LOC_Os03g13790 | Os03g0241100 | - | Detail |
| C1H3g07634 | 3:6,623,249-6,624,724 | + | C2H3g04183 | CX3g030938 | LOC_Os03g13800 | Os03g0241200 | - | Detail |
| C1H3g27482 | 3:6,626,585-6,629,491 | + | C2H3g01854 | CX3g029324 | LOC_Os03g13810 | Os03g0241300 | - | Detail |
| C1H3g15084 | 3:6,629,522-6,633,777 | - | C2H3g18795 | CX3g027367 | LOC_Os03g13820 | Os03g0241600 | - | Detail |
| C1H3g00982 | 3:6,642,447-6,645,772 | - | C2H3g10673 | CX3g028625 | LOC_Os03g13830 | Os03g0241800 | - | Detail |
| C1H3g13149 | 3:6,647,504-6,650,857 | - | C2H3g08630 | CX3g028484 | LOC_Os03g13840 | Os03g0241900 | - | Detail |
| C1H3g14890 | 3:6,653,263-6,659,610 | + | C2H3g09453 | - | LOC_Os03g13850 | Os03g0242100 | OsRAD17 | Detail |
| C1H3g22214 | 3:6,661,004-6,664,415 | + | C2H3g09832 | CX3g029755 | LOC_Os03g13860 | Os03g0242200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g01677 | 3:1,883,766-1,887,423 | - | C1H3g00456 | CX3g025825 | LOC_Os03g04620 | Os03g0139500 | - | Detail |
| C2H3g16470 | 3:1,893,023-1,894,552 | + | C1H3g23782 | CX3g025500 | LOC_Os03g04630 | Os03g0139600 | - | Detail |
| C2H3g12777 | 3:1,933,825-1,935,351 | + | C1H3g00353 | CX3g025500 | LOC_Os03g04650 | Os03g0140100 | - | Detail |
| C2H3g27330 | 3:1,940,534-1,942,090 | + | C1H3g25985 | CX3g025500 | LOC_Os03g04660 | Os03g0140200 | CYP96B5, WSL5 | Detail |
| C2H3g29153 | 3:1,951,839-1,953,458 | + | C1H3g15064 | CX3g025500 | LOC_Os03g04680 | Os03g0140400 | SD37, OsCYP96B4, CYP96B4, CYP96B4/SD37, OsDSS1, DSS1 | Detail |
| C2H3g12329 | 3:1,955,457-1,958,399 | - | C1H3g07260 | CX3g029016 | LOC_Os03g16950 | Os03g0140500 | - | Detail |
| C2H3g13203 | 3:1,964,827-1,965,304 | - | C1H3g31769 | CX3g026380 | - | Os03g0140650 | - | Detail |
| C2H3g17473 | 3:1,987,231-1,988,894 | + | C1H3g10738 | CX3g028112 | LOC_Os03g04710 | Os03g0140700 | - | Detail |
| C2H3g05466 | 3:1,992,006-1,992,782 | + | - | - | - | - | - | Detail |
| C2H3g05277 | 3:1,993,925-1,996,800 | + | C1H3g01474 | CX3g029285 | LOC_Os03g04740 | Os03g0140900 | - | Detail |
| C2H3g19470 | 3:1,997,560-1,999,274 | + | C1H3g10114 | CX3g030261 | LOC_Os03g04750 | Os03g0141000 | - | Detail |
| C2H3g09892 | 3:2,001,052-2,004,476 | + | C1H3g00645 | CX3g026884 | LOC_Os03g04770 | Os03g0141200 | OsBMY4 | Detail |
| C2H3g00749 | 3:2,005,294-2,005,643 | - | C1H3g11403 | CX3g028262 | LOC_Os03g04780 | Os03g0286500 | - | Detail |
| C2H3g24267 | 3:2,008,300-2,011,820 | + | C1H3g11848 | CX3g024968 | LOC_Os03g04830 | Os03g0141700 | - | Detail |
| C2H3g24637 | 3:2,014,747-2,017,084 | + | C1H3g03155 | CX3g027335 | LOC_Os03g04840 | Os03g0141800 | - | Detail |
| C2H3g16825 | 3:2,025,016-2,028,837 | + | C1H3g16077 | CX3g027335 | LOC_Os03g04870 | Os03g0142200 | - | Detail |
| C2H3g26010 | 3:2,035,008-2,038,711 | + | C1H3g31558 | CX3g030528 | LOC_Os03g04890 | Os03g0142500 | - | Detail |
| C2H3g05143 | 3:2,039,567-2,040,522 | - | C1H3g10254 | CX3g030147 | LOC_Os03g04900 | Os03g0142600 | Os2R_MYB33 | Detail |
| C2H3g20094 | 3:2,061,134-2,067,861 | + | C1H3g19270 | CX3g030977 | LOC_Os03g04920 | Os03g0142800 | - | Detail |
| C2H3g26910 | 3:2,068,501-2,074,019 | - | C1H3g30404 | CX3g029043 | LOC_Os03g04930 | Os03g0142900 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |