| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g04582 | 3:6,381,361-6,383,713 | - | C2H3g06567 | CX3g030874 | LOC_Os03g13200 | Os03g0234900 | - | Detail |
| C1H3g27078 | 3:6,385,206-6,386,919 | - | C2H3g02755 | CX3g029207 | LOC_Os03g13210 | Os03g0235000 | - | Detail |
| C1H3g26089 | 3:6,390,544-6,394,673 | + | C2H3g08839 | CX3g031242 | LOC_Os03g13220 | Os03g0235100 | - | Detail |
| C1H3g13556 | 3:6,395,741-6,397,669 | + | C2H3g17418 | CX3g025226 | LOC_Os03g13230 | Os03g0235200 | - | Detail |
| C1H3g13432 | 3:6,398,079-6,402,321 | - | C2H3g00836 | CX3g028197 | LOC_Os03g13240 | Os03g0235300 | - | Detail |
| C1H3g17503 | 3:6,403,144-6,407,078 | - | C2H3g23746 | CX3g027179 | LOC_Os03g13250 | Os03g0235700 | - | Detail |
| C1H3g27354 | 3:6,408,528-6,414,194 | - | C2H3g02723 | CX3g027179 | LOC_Os03g13274 | Os03g0235900 | - | Detail |
| C1H3g10596 | 3:6,425,260-6,428,167 | + | C2H3g28344 | CX3g025606 | LOC_Os03g13300 | Os03g0236200 | OsGAD3 | Detail |
| C1H3g09841 | 3:6,433,924-6,436,250 | - | C2H3g11740 | CX3g027825 | LOC_Os03g13340 | Os03g0236675 | - | Detail |
| C1H3g26140 | 3:6,437,122-6,437,757 | + | C2H3g20390 | CX3g027924 | LOC_Os03g13360 | Os03g0236800 | - | Detail |
| C1H3g26595 | 3:6,439,268-6,439,918 | + | C2H3g08095 | CX3g026764 | LOC_Os03g13370 | Os03g0236900 | - | Detail |
| C1H3g30353 | 3:6,442,171-6,450,599 | + | C2H3g11238 | CX3g030333 | LOC_Os03g13370 | Os03g0236966 | OsAPC6 | Detail |
| C1H3g16967 | 3:6,452,988-6,457,337 | + | C2H3g29074 | CX3g025761 | LOC_Os03g13380 | Os03g0237000 | - | Detail |
| C1H3g11077 | 3:6,459,492-6,461,434 | + | - | CX3g026598 | LOC_Os03g13390 | Os03g0237100 | - | Detail |
| C1H3g08429 | 3:6,466,345-6,470,824 | - | C2H3g28705 | CX3g027254 | LOC_Os03g13400 | Os03g0237250 | OsIDD14, LPA1 | Detail |
| C1H3g09361 | 3:6,492,558-6,493,100 | + | C2H3g29962 | CX3g028559 | LOC_Os03g13450 | Os03g0237500 | - | Detail |
| C1H3g17244 | 3:6,496,199-6,502,191 | - | C2H3g03025 | CX3g028914 | LOC_Os03g13460 | Os03g0237600 | - | Detail |
| C1H3g24201 | 3:6,508,837-6,512,414 | - | C2H3g23135 | CX3g025055 | LOC_Os03g13480 | Os03g0237950 | - | Detail |
| C1H3g02595 | 3:6,518,226-6,521,431 | - | C2H3g22282 | CX3g025312 | LOC_Os03g13520 | Os03g0238300 | - | Detail |
| C1H3g23768 | 3:6,537,847-6,540,706 | + | C2H3g15172 | CX3g029412 | LOC_Os03g13540 | Os03g0238600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g02245 | 3:7,522,799-7,525,665 | + | C1H3g09649 | CX3g029180 | LOC_Os03g15560 | Os03g0262100 | - | Detail |
| C2H3g27971 | 3:7,526,761-7,531,054 | - | C1H3g05616 | CX3g026565 | LOC_Os03g15570 | Os03g0262200 | - | Detail |
| C2H3g16143 | 3:7,535,546-7,549,342 | - | C1H3g16946 | CX3g027558 | LOC_Os03g15580 | Os03g0262300 | - | Detail |
| C2H3g26303 | 3:7,550,865-7,553,322 | - | C1H3g00248 | CX3g026755 | LOC_Os03g15590 | Os03g0262400 | - | Detail |
| C2H3g04568 | 3:7,559,791-7,560,498 | + | C1H3g17162 | CX3g029077 | LOC_Os03g15630 | Os03g0262700 | - | Detail |
| C2H3g27525 | 3:7,565,251-7,570,656 | + | C1H3g28720 | CX3g031108 | LOC_Os03g15650 | Os03g0262900 | GLUP6/GEF, OsVPS9A, VPS9a, GPA2/VPS9a, GPA2, GLUP6 | Detail |
| C2H3g13896 | 3:7,571,755-7,572,516 | - | C1H3g05394 | CX3g028305 | LOC_Os03g15660 | Os03g0263000 | - | Detail |
| C2H3g08920 | 3:7,588,969-7,590,720 | + | C1H3g03212 | CX3g027760 | LOC_Os03g15680 | Os03g0263300 | NSP2, Os NSP2, NSP2 | Detail |
| C2H3g28518 | 3:7,593,977-7,597,874 | + | C1H3g04873 | CX3g028003 | LOC_Os03g15690 | Os03g0263400 | - | Detail |
| C2H3g08217 | 3:7,598,202-7,600,903 | - | C1H3g22836 | CX3g030022 | LOC_Os03g15700 | Os03g0263500 | - | Detail |
| C2H3g20978 | 3:7,602,409-7,603,988 | - | C1H3g14620 | CX3g031268 | LOC_Os03g15710 | Os03g0263600 | OsSTRL2 | Detail |
| C2H3g30231 | 3:7,605,724-7,608,200 | + | C1H3g20320 | CX3g028260 | LOC_Os03g15720 | Os03g0263700 | - | Detail |
| C2H3g12908 | 3:7,611,168-7,613,824 | + | C1H3g15450 | CX3g027745 | LOC_Os03g15730 | Os03g0263800 | - | Detail |
| C2H3g16128 | 3:7,617,057-7,619,603 | + | C1H3g29175 | CX3g026739 | LOC_Os03g15740 | Os03g0263900 | - | Detail |
| C2H3g07359 | 3:7,621,932-7,625,771 | - | C1H3g24070 | CX3g027842 | LOC_Os03g15750 | Os03g0264000 | - | Detail |
| C2H3g24590 | 3:7,633,149-7,637,166 | + | C1H3g19617 | CX3g030764 | LOC_Os03g15770 | Os03g0264300 | - | Detail |
| C2H3g11898 | 3:7,637,698-7,642,403 | - | C1H3g02519 | CX3g029488 | LOC_Os03g15780 | Os03g0264400 | - | Detail |
| C2H3g27599 | 3:7,646,930-7,648,300 | - | C1H3g09016 | CX3g027532 | LOC_Os03g15790 | Os03g0264600 | - | Detail |
| C2H3g02876 | 3:7,651,843-7,653,288 | - | C1H3g19306 | CX3g025411 | LOC_Os03g15800 | Os03g0264700 | - | Detail |
| C2H3g07031 | 3:7,653,862-7,661,556 | - | C1H3g00653 | CX3g030279 | LOC_Os03g15810 | Os03g0264800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |