| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g04613 | 3:6,241,187-6,242,617 | - | C2H3g04826 | CX3g030910 | LOC_Os03g12940 | Os03g0232000 | OsFBO13 | Detail |
| C1H3g30000 | 3:6,247,635-6,251,913 | - | C2H3g04774 | CX3g029956 | LOC_Os03g12950 | Os03g0232200 | - | Detail |
| C1H3g29239 | 3:6,268,484-6,268,779 | + | C2H4g27073 | - | - | - | - | Detail |
| C1H3g14582 | 3:6,268,806-6,269,027 | + | C2H4g11700 | CX3g029446 | - | Os02g0324200 | - | Detail |
| C1H3g07150 | 3:6,279,894-6,280,322 | + | C2H3g26123 | CX3g028212 | LOC_Os03g12990 | Os03g0232400 | - | Detail |
| C1H3g22613 | 3:6,284,313-6,284,713 | - | C2H3g04799 | CX3g028040 | - | Os02g0738300 | - | Detail |
| C1H3g28102 | 3:6,284,992-6,287,738 | + | C2H3g26449 | CX3g028651 | LOC_Os03g13000 | Os03g0232500 | - | Detail |
| C1H3g02271 | 3:6,293,199-6,294,578 | - | C2H3g15250 | CX3g031218 | LOC_Os03g13010 | Os03g0232600 | ELF1, OsPUB31, OsPUB75, TUD1, OsTUD1 | Detail |
| C1H3g01497 | 3:6,310,077-6,311,798 | - | C2H3g13166 | CX3g029569 | LOC_Os03g13030 | Os03g0232800 | - | Detail |
| C1H3g06697 | 3:6,312,892-6,316,654 | - | C2H3g05297 | CX3g027690 | LOC_Os03g13040 | Os03g0232900 | - | Detail |
| C1H3g26874 | 3:6,329,350-6,330,859 | + | C2H3g03038 | CX3g025391 | LOC_Os03g13050 | Os03g0233000 | - | Detail |
| C1H3g16800 | 3:6,332,793-6,333,953 | - | C2H3g18690 | CX3g030154 | LOC_Os03g13070 | Os03g0233200 | - | Detail |
| C1H3g06079 | 3:6,335,141-6,338,733 | - | C2H3g14812 | CX3g029185 | LOC_Os03g13080 | Os03g0233300 | OsLysM-RLK2, OsLYK5, OsNFR5/OsRLK2 | Detail |
| C1H3g06632 | 3:6,341,866-6,345,383 | + | C2H3g23005 | CX3g028548 | LOC_Os03g13100 | Os03g0233500 | - | Detail |
| C1H3g16553 | 3:6,349,440-6,353,368 | + | C2H3g09799 | CX3g029407 | LOC_Os03g13130 | Os03g0233800 | - | Detail |
| C1H3g27731 | 3:6,354,094-6,354,936 | + | C2H3g17247 | CX3g025432 | LOC_Os03g13140 | Os03g0233900 | Hb1, OsPgb1.1 | Detail |
| C1H3g19664 | 3:6,357,836-6,358,710 | + | C2H3g00667 | CX3g027207 | LOC_Os03g13150 | Os03g0234000 | - | Detail |
| C1H3g02151 | 3:6,360,956-6,361,945 | + | C2H3g02090 | CX3g030474 | LOC_Os03g13160 | Os03g0234100 | - | Detail |
| C1H3g22268 | 3:6,367,751-6,368,947 | + | C2H3g20297 | CX3g028385 | LOC_Os03g13180 | Os03g0234500 | - | Detail |
| C1H3g22029 | 3:6,370,718-6,375,395 | - | C2H3g00447 | CX3g027164 | LOC_Os03g13190 | Os03g0234600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g18224 | 5:4,227,210-4,230,972 | + | C1H5g05974 | CX5g038289 | LOC_Os05g09380 | Os05g0185800 | - | Detail |
| C2H5g05596 | 5:4,233,794-4,234,505 | - | C1H5g28043 | CX5g040038 | LOC_Os05g09400 | Os05g0186000 | - | Detail |
| C2H5g21372 | 5:4,235,358-4,237,338 | - | C1H5g30722 | CX5g037460 | LOC_Os05g09410 | Os05g0186100 | - | Detail |
| C2H5g01818 | 5:4,259,249-4,262,399 | - | C1H5g29951 | CX5g040773 | LOC_Os05g09440 | Os05g0186300 | OscytME2 | Detail |
| C2H5g09922 | 5:4,281,169-4,286,884 | - | - | CX5g040790 | - | - | - | Detail |
| C2H5g14302 | 5:4,295,553-4,296,733 | + | C1H5g15338 | CX5g038771 | LOC_Os05g09480 | Os05g0186900 | - | Detail |
| C2H5g05087 | 5:4,299,101-4,302,177 | + | C1H5g17719 | CX5g038344 | LOC_Os05g09490 | Os05g0187000 | - | Detail |
| C2H5g26943 | 5:4,303,262-4,306,796 | - | C1H5g12871 | CX5g040622 | LOC_Os05g09500 | Os05g0187100 | HXK7, OsHXK7 | Detail |
| C2H5g15839 | 5:4,329,455-4,331,044 | + | C1H5g02122 | CX5g037764 | LOC_Os05g09520 | Os05g0187500 | GW5, qSW5/GW5, GSE5 | Detail |
| C2H5g22129 | 5:4,356,213-4,358,586 | + | C1H5g17901 | - | LOC_Os05g09530 | - | - | Detail |
| C2H5g03022 | 5:4,358,933-4,359,934 | - | C1H5g08885 | CX5g038920 | LOC_Os05g09540 | - | - | Detail |
| C2H5g16747 | 5:4,361,635-4,364,800 | - | C1H5g25239 | CX5g037837 | LOC_Os05g09550 | Os05g0187800 | OsDER1 | Detail |
| C2H5g21878 | 5:4,382,435-4,382,827 | + | C1H5g18908 | CX5g040429 | LOC_Os05g09600 | Os05g0188300 | - | Detail |
| C2H5g20106 | 5:4,387,389-4,395,973 | + | C1H5g23924 | CX5g039467 | LOC_Os05g09620 | Os05g0188500 | - | Detail |
| C2H5g29497 | 5:4,398,575-4,407,238 | + | C1H5g20831 | CX5g037834 | LOC_Os05g09630 | Os05g0188600 | - | Detail |
| C2H5g23942 | 5:4,414,270-4,415,498 | + | C1H5g28584 | CX5g038113 | LOC_Os05g09650 | Os05g0188800 | - | Detail |
| C2H5g16237 | 5:4,417,528-4,419,900 | - | C1H5g04541 | CX5g040777 | LOC_Os05g10210 | Os05g0190500 | - | Detail |
| C2H5g26411 | 5:4,431,813-4,433,520 | - | C1H5g30574 | CX5g039264 | LOC_Os05g09704 | Os05g0189300 | - | Detail |
| C2H5g22250 | 5:4,445,415-4,451,156 | - | C1H5g13089 | CX5g036899 | LOC_Os05g09724 | Os05g0189900 | - | Detail |
| C2H5g13503 | 5:4,462,377-4,467,058 | - | C1H5g13089 | CX5g036899 | LOC_Os05g09724 | Os05g0189900 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |