| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g04613 | 3:6,241,187-6,242,617 | - | C2H3g04826 | CX3g030910 | LOC_Os03g12940 | Os03g0232000 | OsFBO13 | Detail |
| C1H3g30000 | 3:6,247,635-6,251,913 | - | C2H3g04774 | CX3g029956 | LOC_Os03g12950 | Os03g0232200 | - | Detail |
| C1H3g29239 | 3:6,268,484-6,268,779 | + | C2H4g27073 | - | - | - | - | Detail |
| C1H3g14582 | 3:6,268,806-6,269,027 | + | C2H4g11700 | CX3g029446 | - | Os02g0324200 | - | Detail |
| C1H3g07150 | 3:6,279,894-6,280,322 | + | C2H3g26123 | CX3g028212 | LOC_Os03g12990 | Os03g0232400 | - | Detail |
| C1H3g22613 | 3:6,284,313-6,284,713 | - | C2H3g04799 | CX3g028040 | - | Os02g0738300 | - | Detail |
| C1H3g28102 | 3:6,284,992-6,287,738 | + | C2H3g26449 | CX3g028651 | LOC_Os03g13000 | Os03g0232500 | - | Detail |
| C1H3g02271 | 3:6,293,199-6,294,578 | - | C2H3g15250 | CX3g031218 | LOC_Os03g13010 | Os03g0232600 | ELF1, OsPUB31, OsPUB75, TUD1, OsTUD1 | Detail |
| C1H3g01497 | 3:6,310,077-6,311,798 | - | C2H3g13166 | CX3g029569 | LOC_Os03g13030 | Os03g0232800 | - | Detail |
| C1H3g06697 | 3:6,312,892-6,316,654 | - | C2H3g05297 | CX3g027690 | LOC_Os03g13040 | Os03g0232900 | - | Detail |
| C1H3g26874 | 3:6,329,350-6,330,859 | + | C2H3g03038 | CX3g025391 | LOC_Os03g13050 | Os03g0233000 | - | Detail |
| C1H3g16800 | 3:6,332,793-6,333,953 | - | C2H3g18690 | CX3g030154 | LOC_Os03g13070 | Os03g0233200 | - | Detail |
| C1H3g06079 | 3:6,335,141-6,338,733 | - | C2H3g14812 | CX3g029185 | LOC_Os03g13080 | Os03g0233300 | OsLysM-RLK2, OsLYK5, OsNFR5/OsRLK2 | Detail |
| C1H3g06632 | 3:6,341,866-6,345,383 | + | C2H3g23005 | CX3g028548 | LOC_Os03g13100 | Os03g0233500 | - | Detail |
| C1H3g16553 | 3:6,349,440-6,353,368 | + | C2H3g09799 | CX3g029407 | LOC_Os03g13130 | Os03g0233800 | - | Detail |
| C1H3g27731 | 3:6,354,094-6,354,936 | + | C2H3g17247 | CX3g025432 | LOC_Os03g13140 | Os03g0233900 | Hb1, OsPgb1.1 | Detail |
| C1H3g19664 | 3:6,357,836-6,358,710 | + | C2H3g00667 | CX3g027207 | LOC_Os03g13150 | Os03g0234000 | - | Detail |
| C1H3g02151 | 3:6,360,956-6,361,945 | + | C2H3g02090 | CX3g030474 | LOC_Os03g13160 | Os03g0234100 | - | Detail |
| C1H3g22268 | 3:6,367,751-6,368,947 | + | C2H3g20297 | CX3g028385 | LOC_Os03g13180 | Os03g0234500 | - | Detail |
| C1H3g22029 | 3:6,370,718-6,375,395 | - | C2H3g00447 | CX3g027164 | LOC_Os03g13190 | Os03g0234600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g00826 | 4:20,203,297-20,204,190 | - | C1H4g13002 | CX4g031871 | LOC_Os04g39290 | Os04g0468600 | - | Detail |
| C2H4g28540 | 4:20,218,237-20,219,423 | - | C1H4g09844 | CX4g031871 | LOC_Os04g39350 | Os04g0468600 | - | Detail |
| C2H4g30213 | 4:20,227,972-20,228,483 | - | C1H4g30641 | CX4g031871 | LOC_Os04g39350 | Os04g0469000 | OsHIPP19 | Detail |
| C2H4g04079 | 4:20,233,795-20,234,353 | - | C1H4g30641 | CX4g031871 | LOC_Os04g39360 | Os04g0464100 | - | Detail |
| C2H4g12643 | 4:20,240,849-20,241,351 | - | C1H4g24517 | CX4g031871 | LOC_Os04g39370 | Os04g0464100 | - | Detail |
| C2H4g22566 | 4:20,245,793-20,246,367 | - | C1H4g19119 | CX4g031871 | LOC_Os04g39380 | Os04g0469300 | - | Detail |
| C2H4g16193 | 4:20,259,690-20,262,500 | - | C1H4g14312 | CX4g035959 | LOC_Os04g39410 | Os04g0469400 | - | Detail |
| C2H4g19587 | 4:20,263,143-20,263,346 | + | - | - | - | - | - | Detail |
| C2H4g03036 | 4:20,263,880-20,264,284 | - | C1H2g17655 | CX4g033399 | LOC_Os06g20130 | - | - | Detail |
| C2H4g20947 | 4:20,266,137-20,268,681 | + | C1H4g28716 | CX4g031835 | LOC_Os04g39420 | Os04g0469500 | - | Detail |
| C2H4g26649 | 4:20,269,705-20,270,858 | + | C1H4g19504 | - | - | Os04g0469700 | - | Detail |
| C2H4g02324 | 4:20,270,685-20,274,525 | - | C1H4g13688 | CX4g031362 | LOC_Os04g39430 | Os04g0469800 | - | Detail |
| C2H4g09164 | 4:20,295,292-20,297,142 | + | C1H4g02373 | CX4g033779 | LOC_Os04g39440 | Os04g0470100 | - | Detail |
| C2H4g05245 | 4:20,298,082-20,301,397 | - | C1H4g27787 | CX4g034394 | LOC_Os04g39444 | Os04g0470150 | - | Detail |
| C2H4g03464 | 4:20,302,632-20,305,194 | - | C1H4g30504 | CX4g033373 | LOC_Os04g39450 | Os04g0470300 | - | Detail |
| C2H4g03220 | 4:20,306,369-20,307,798 | - | - | - | - | Os04g0389600 | - | Detail |
| C2H4g03118 | 4:20,308,482-20,318,764 | - | C1H4g01338 | CX4g033874 | LOC_Os04g39489 | Os04g0470700 | - | Detail |
| C2H4g06381 | 4:20,326,640-20,328,370 | + | C1H4g02842 | CX4g032387 | LOC_Os04g39520 | Os04g0471000 | - | Detail |
| C2H4g03143 | 4:20,331,248-20,333,400 | - | C1H4g00776 | CX4g034525 | LOC_Os04g39540 | Os04g0471300 | - | Detail |
| C2H4g24543 | 4:20,340,461-20,347,316 | - | C1H4g08563 | CX4g035565 | LOC_Os04g39560 | Os04g0471400 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |