| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g04613 | 3:6,241,187-6,242,617 | - | C2H3g04826 | CX3g030910 | LOC_Os03g12940 | Os03g0232000 | OsFBO13 | Detail |
| C1H3g30000 | 3:6,247,635-6,251,913 | - | C2H3g04774 | CX3g029956 | LOC_Os03g12950 | Os03g0232200 | - | Detail |
| C1H3g29239 | 3:6,268,484-6,268,779 | + | C2H4g27073 | - | - | - | - | Detail |
| C1H3g14582 | 3:6,268,806-6,269,027 | + | C2H4g11700 | CX3g029446 | - | Os02g0324200 | - | Detail |
| C1H3g07150 | 3:6,279,894-6,280,322 | + | C2H3g26123 | CX3g028212 | LOC_Os03g12990 | Os03g0232400 | - | Detail |
| C1H3g22613 | 3:6,284,313-6,284,713 | - | C2H3g04799 | CX3g028040 | - | Os02g0738300 | - | Detail |
| C1H3g28102 | 3:6,284,992-6,287,738 | + | C2H3g26449 | CX3g028651 | LOC_Os03g13000 | Os03g0232500 | - | Detail |
| C1H3g02271 | 3:6,293,199-6,294,578 | - | C2H3g15250 | CX3g031218 | LOC_Os03g13010 | Os03g0232600 | ELF1, OsPUB31, OsPUB75, TUD1, OsTUD1 | Detail |
| C1H3g01497 | 3:6,310,077-6,311,798 | - | C2H3g13166 | CX3g029569 | LOC_Os03g13030 | Os03g0232800 | - | Detail |
| C1H3g06697 | 3:6,312,892-6,316,654 | - | C2H3g05297 | CX3g027690 | LOC_Os03g13040 | Os03g0232900 | - | Detail |
| C1H3g26874 | 3:6,329,350-6,330,859 | + | C2H3g03038 | CX3g025391 | LOC_Os03g13050 | Os03g0233000 | - | Detail |
| C1H3g16800 | 3:6,332,793-6,333,953 | - | C2H3g18690 | CX3g030154 | LOC_Os03g13070 | Os03g0233200 | - | Detail |
| C1H3g06079 | 3:6,335,141-6,338,733 | - | C2H3g14812 | CX3g029185 | LOC_Os03g13080 | Os03g0233300 | OsLysM-RLK2, OsLYK5, OsNFR5/OsRLK2 | Detail |
| C1H3g06632 | 3:6,341,866-6,345,383 | + | C2H3g23005 | CX3g028548 | LOC_Os03g13100 | Os03g0233500 | - | Detail |
| C1H3g16553 | 3:6,349,440-6,353,368 | + | C2H3g09799 | CX3g029407 | LOC_Os03g13130 | Os03g0233800 | - | Detail |
| C1H3g27731 | 3:6,354,094-6,354,936 | + | C2H3g17247 | CX3g025432 | LOC_Os03g13140 | Os03g0233900 | Hb1, OsPgb1.1 | Detail |
| C1H3g19664 | 3:6,357,836-6,358,710 | + | C2H3g00667 | CX3g027207 | LOC_Os03g13150 | Os03g0234000 | - | Detail |
| C1H3g02151 | 3:6,360,956-6,361,945 | + | C2H3g02090 | CX3g030474 | LOC_Os03g13160 | Os03g0234100 | - | Detail |
| C1H3g22268 | 3:6,367,751-6,368,947 | + | C2H3g20297 | CX3g028385 | LOC_Os03g13180 | Os03g0234500 | - | Detail |
| C1H3g22029 | 3:6,370,718-6,375,395 | - | C2H3g00447 | CX3g027164 | LOC_Os03g13190 | Os03g0234600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g06589 | 3:19,779,082-19,779,789 | + | C1H3g26388 | CX3g027290 | LOC_Os03g38490 | Os03g0581600 | - | Detail |
| C2H3g11410 | 3:19,786,089-19,790,222 | + | C1H3g13237 | CX3g026435 | LOC_Os03g38500 | Os03g0581650 | - | Detail |
| C2H3g06922 | 3:19,793,124-19,796,821 | + | C1H3g17977 | CX3g028447 | LOC_Os03g38520 | Os03g0581800 | - | Detail |
| C2H3g10966 | 3:19,802,125-19,804,059 | + | C1H3g14219 | CX3g027412 | LOC_Os03g38540 | Os03g0582000 | - | Detail |
| C2H3g04652 | 3:19,805,126-19,807,078 | - | C1H3g04338 | CX3g028106 | LOC_Os03g38580 | Os03g0582100 | - | Detail |
| C2H3g02001 | 3:19,810,123-19,813,682 | - | C1H3g18500 | CX3g025759 | LOC_Os03g38590 | Os03g0582200 | - | Detail |
| C2H3g21731 | 3:19,814,546-19,819,217 | - | C1H3g03271 | CX3g025759 | LOC_Os03g38600 | Os03g0582300 | - | Detail |
| C2H3g25116 | 3:19,850,361-19,852,815 | + | C1H3g13726 | CX3g029359 | - | - | - | Detail |
| C2H3g10218 | 3:19,854,174-19,855,859 | - | C1H3g28190 | CX3g028203 | LOC_Os03g38710 | Os03g0583600 | OsPERK3 | Detail |
| C2H3g00374 | 3:19,862,418-19,862,882 | - | C1H3g28190 | CX3g028203 | LOC_Os03g38710 | Os03g0583600 | OsPERK3 | Detail |
| C2H3g24537 | 3:19,867,155-19,870,266 | + | C1H3g03200 | CX3g026919 | LOC_Os03g38720 | Os03g0583700 | OsUMP1 | Detail |
| C2H3g24800 | 3:19,875,886-19,878,055 | + | C1H3g23310 | CX3g030948 | LOC_Os03g38730 | Os03g0583800 | - | Detail |
| C2H3g29289 | 3:19,878,360-19,893,009 | - | C1H3g04436 | CX3g030903 | LOC_Os03g38740 | Os03g0583900 | - | Detail |
| C2H3g12332 | 3:19,901,010-19,901,665 | + | C1H3g11527 | CX3g028495 | LOC_Os03g38790 | Os03g0568500 | - | Detail |
| C2H3g13791 | 3:19,909,018-19,910,330 | + | C1H3g01309 | CX3g028700 | LOC_Os03g38790 | Os03g0568500 | - | Detail |
| C2H3g24653 | 3:19,911,161-19,912,750 | - | C1H3g23323 | CX3g030820 | LOC_Os03g38800 | Os03g0584400 | - | Detail |
| C2H3g23071 | 3:19,913,095-19,913,820 | - | - | - | - | - | - | Detail |
| C2H3g19485 | 3:19,922,006-19,923,422 | - | C1H3g11030 | CX3g025305 | - | - | - | Detail |
| C2H3g10367 | 3:19,923,603-19,924,292 | - | C1H3g22207 | CX3g025305 | - | - | - | Detail |
| C2H3g17956 | 3:19,973,161-19,979,164 | - | C1H3g12087 | CX3g028633 | LOC_Os03g38930 | Os03g0586300 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |