| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g04613 | 3:6,241,187-6,242,617 | - | C2H3g04826 | CX3g030910 | LOC_Os03g12940 | Os03g0232000 | OsFBO13 | Detail |
| C1H3g30000 | 3:6,247,635-6,251,913 | - | C2H3g04774 | CX3g029956 | LOC_Os03g12950 | Os03g0232200 | - | Detail |
| C1H3g29239 | 3:6,268,484-6,268,779 | + | C2H4g27073 | - | - | - | - | Detail |
| C1H3g14582 | 3:6,268,806-6,269,027 | + | C2H4g11700 | CX3g029446 | - | Os02g0324200 | - | Detail |
| C1H3g07150 | 3:6,279,894-6,280,322 | + | C2H3g26123 | CX3g028212 | LOC_Os03g12990 | Os03g0232400 | - | Detail |
| C1H3g22613 | 3:6,284,313-6,284,713 | - | C2H3g04799 | CX3g028040 | - | Os02g0738300 | - | Detail |
| C1H3g28102 | 3:6,284,992-6,287,738 | + | C2H3g26449 | CX3g028651 | LOC_Os03g13000 | Os03g0232500 | - | Detail |
| C1H3g02271 | 3:6,293,199-6,294,578 | - | C2H3g15250 | CX3g031218 | LOC_Os03g13010 | Os03g0232600 | ELF1, OsPUB31, OsPUB75, TUD1, OsTUD1 | Detail |
| C1H3g01497 | 3:6,310,077-6,311,798 | - | C2H3g13166 | CX3g029569 | LOC_Os03g13030 | Os03g0232800 | - | Detail |
| C1H3g06697 | 3:6,312,892-6,316,654 | - | C2H3g05297 | CX3g027690 | LOC_Os03g13040 | Os03g0232900 | - | Detail |
| C1H3g26874 | 3:6,329,350-6,330,859 | + | C2H3g03038 | CX3g025391 | LOC_Os03g13050 | Os03g0233000 | - | Detail |
| C1H3g16800 | 3:6,332,793-6,333,953 | - | C2H3g18690 | CX3g030154 | LOC_Os03g13070 | Os03g0233200 | - | Detail |
| C1H3g06079 | 3:6,335,141-6,338,733 | - | C2H3g14812 | CX3g029185 | LOC_Os03g13080 | Os03g0233300 | OsLysM-RLK2, OsLYK5, OsNFR5/OsRLK2 | Detail |
| C1H3g06632 | 3:6,341,866-6,345,383 | + | C2H3g23005 | CX3g028548 | LOC_Os03g13100 | Os03g0233500 | - | Detail |
| C1H3g16553 | 3:6,349,440-6,353,368 | + | C2H3g09799 | CX3g029407 | LOC_Os03g13130 | Os03g0233800 | - | Detail |
| C1H3g27731 | 3:6,354,094-6,354,936 | + | C2H3g17247 | CX3g025432 | LOC_Os03g13140 | Os03g0233900 | Hb1, OsPgb1.1 | Detail |
| C1H3g19664 | 3:6,357,836-6,358,710 | + | C2H3g00667 | CX3g027207 | LOC_Os03g13150 | Os03g0234000 | - | Detail |
| C1H3g02151 | 3:6,360,956-6,361,945 | + | C2H3g02090 | CX3g030474 | LOC_Os03g13160 | Os03g0234100 | - | Detail |
| C1H3g22268 | 3:6,367,751-6,368,947 | + | C2H3g20297 | CX3g028385 | LOC_Os03g13180 | Os03g0234500 | - | Detail |
| C1H3g22029 | 3:6,370,718-6,375,395 | - | C2H3g00447 | CX3g027164 | LOC_Os03g13190 | Os03g0234600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g21542 | 1:32,833,249-32,835,574 | + | C1H1g16825 | CX1g001047 | LOC_Os01g64010 | Os01g0859400 | - | Detail |
| C2H1g11632 | 1:32,839,368-32,843,723 | - | C1H1g23015 | CX1g003099 | LOC_Os01g64020 | Os01g0859500 | OsLG2, rLG2 | Detail |
| C2H1g19694 | 1:32,844,132-32,844,446 | - | C1H1g23015 | - | LOC_Os01g64020 | Os01g0859500 | OsLG2, rLG2 | Detail |
| C2H1g13590 | 1:32,854,526-32,856,398 | + | C1H1g07034 | CX1g006927 | LOC_Os01g64090 | Os01g0860300 | - | Detail |
| C2H1g17934 | 1:32,858,646-32,859,152 | + | C1H1g22082 | CX1g003532 | LOC_Os01g64100 | Os01g0860400 | - | Detail |
| C2H1g12147 | 1:32,859,212-32,859,622 | + | C1H1g27202 | CX1g003532 | LOC_Os01g64100 | Os01g0860400 | - | Detail |
| C2H1g02020 | 1:32,871,496-32,875,877 | + | C1H1g21642 | CX1g004023 | LOC_Os01g71830 | Os01g0860800 | - | Detail |
| C2H1g24709 | 1:32,877,299-32,878,189 | - | C1H1g02555 | CX1g001565 | LOC_Os01g64180 | Os01g0860900 | - | Detail |
| C2H1g12898 | 1:32,886,684-32,890,688 | + | C1H1g19645 | CX1g001303 | LOC_Os01g64250 | Os01g0861700 | - | Detail |
| C2H1g16354 | 1:32,891,415-32,893,098 | - | C1H1g02871 | CX1g000394 | LOC_Os01g64256 | Os01g0861900 | - | Detail |
| C2H1g00349 | 1:32,894,004-32,896,268 | - | C1H1g27132 | CX1g004610 | LOC_Os01g64262 | Os01g0862000 | - | Detail |
| C2H1g29651 | 1:32,896,793-32,897,537 | + | C1H1g31062 | CX1g005876 | LOC_Os01g64270 | Os01g0862200 | - | Detail |
| C2H1g22939 | 1:32,897,637-32,901,901 | - | C1H1g18011 | CX1g004635 | LOC_Os01g64280 | Os01g0862300 | - | Detail |
| C2H1g26579 | 1:32,915,924-32,917,260 | + | C1H1g25790 | CX1g005937 | LOC_Os01g64310 | Os01g0862800 | ENAC1, NAC59 | Detail |
| C2H1g23575 | 1:32,931,609-32,932,380 | + | C1H1g31779 | CX1g004571 | LOC_Os01g64360 | Os01g0863300 | - | Detail |
| C2H1g20445 | 1:32,933,669-32,936,528 | - | C1H1g18221 | CX1g002878 | LOC_Os01g64370 | Os01g0863400 | - | Detail |
| C2H1g29837 | 1:32,938,502-32,939,267 | + | C1H1g03594 | CX1g002036 | - | Os01g0863500 | REL1 | Detail |
| C2H1g03788 | 1:32,984,928-32,991,266 | - | C1H1g31339 | - | - | - | - | Detail |
| C2H1g19719 | 1:32,997,775-33,001,552 | - | C1H1g19766 | CX1g005197 | LOC_Os01g64520 | Os01g0865100 | - | Detail |
| C2H1g23075 | 1:33,012,116-33,017,973 | + | C1H1g22449 | CX1g004450 | LOC_Os01g64560 | Os01g0865600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |