| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g15751 | 3:5,984,629-5,989,313 | - | C2H3g22097 | CX3g027410 | LOC_Os03g12680 | Os03g0227900 | - | Detail |
| C1H3g25563 | 3:6,001,188-6,002,188 | - | C2H3g16447 | CX3g026331 | LOC_Os03g12700 | Os03g0228200 | - | Detail |
| C1H3g16232 | 3:6,005,101-6,007,425 | + | C2H3g25355 | CX3g026814 | LOC_Os03g12710 | Os03g0228400 | - | Detail |
| C1H3g10418 | 3:6,009,448-6,009,668 | - | - | CX3g025837 | - | - | - | Detail |
| C1H3g23512 | 3:6,032,384-6,035,395 | + | C2H3g13539 | CX3g031224 | LOC_Os03g12720 | Os03g0228500 | - | Detail |
| C1H3g12564 | 3:6,049,802-6,053,627 | - | C2H3g13159 | CX3g027642 | LOC_Os03g12730 | Os03g0228800 | OsBRR1 | Detail |
| C1H3g01094 | 3:6,064,388-6,065,508 | - | C2H3g13186 | CX3g028683 | LOC_Os03g12760 | Os03g0229100 | - | Detail |
| C1H3g22208 | 3:6,091,929-6,094,842 | - | C2H3g28054 | CX3g029657 | LOC_Os03g12790 | Os03g0229500 | GS3.1 | Detail |
| C1H3g02835 | 3:6,102,839-6,108,243 | - | C2H3g29189 | CX3g031223 | - | Os03g0229575 | - | Detail |
| C1H3g05308 | 3:6,110,884-6,114,139 | - | C2H3g27019 | CX3g025778 | LOC_Os03g12810 | Os03g0229600 | - | Detail |
| C1H3g12624 | 3:6,115,043-6,115,252 | - | C2H3g25429 | - | - | - | - | Detail |
| C1H3g02612 | 3:6,134,243-6,136,920 | + | C2H3g25845 | CX3g029726 | LOC_Os03g12820 | Os03g0230300 | - | Detail |
| C1H3g04395 | 3:6,138,850-6,139,179 | - | C2H3g14412 | CX3g025129 | - | - | - | Detail |
| C1H3g30651 | 3:6,141,034-6,146,413 | + | C2H3g19351 | CX3g029537 | LOC_Os03g12840 | Os03g0230500 | DSM3, DSM3/OsITPK2, OsITL1, OsITPK2 | Detail |
| C1H3g20871 | 3:6,174,292-6,175,674 | + | C2H3g08152 | CX3g028083 | LOC_Os03g12860 | Os03g0231150 | - | Detail |
| C1H3g09365 | 3:6,197,066-6,199,458 | + | C2H3g24795 | CX3g026479 | LOC_Os03g12890 | Os03g0231600 | OsBCAT2 | Detail |
| C1H3g15109 | 3:6,202,066-6,205,181 | - | C2H3g23260 | CX3g029672 | LOC_Os03g12900 | Os03g0231700 | - | Detail |
| C1H3g26830 | 3:6,206,150-6,211,305 | - | C2H3g25882 | CX3g029672 | LOC_Os03g12910 | Os03g0231800 | - | Detail |
| C1H3g13331 | 3:6,228,148-6,231,008 | - | C2H3g00833 | CX3g027611 | LOC_Os03g12930 | Os03g0231900 | - | Detail |
| C1H3g17846 | 3:6,234,174-6,236,190 | - | C2H3g09594 | CX3g030152 | LOC_Os03g12940 | Os03g0231950 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H12g26650 | 12:14,387,144-14,387,437 | - | C1H1g26536 | CX12g016337 | - | - | - | Detail |
| C2H12g01667 | 12:14,389,150-14,391,585 | + | C1H12g20928 | CX12g016423 | LOC_Os12g27830 | Os12g0464400 | - | Detail |
| C2H12g23283 | 12:14,399,954-14,400,682 | + | C1H12g16659 | CX12g015400 | LOC_Os12g27850 | Os12g0465000 | - | Detail |
| C2H12g13573 | 12:14,419,281-14,420,007 | + | C1H12g04307 | CX12g015400 | LOC_Os12g27930 | Os12g0465000 | - | Detail |
| C2H12g04383 | 12:14,428,183-14,428,734 | + | C1H12g22166 | CX12g015400 | LOC_Os12g27940 | Os12g0465100 | - | Detail |
| C2H12g28192 | 12:14,431,353-14,431,949 | + | C1H12g19521 | - | LOC_Os12g27950 | Os12g0465100 | - | Detail |
| C2H12g07320 | 12:14,435,945-14,436,289 | + | C1H12g13640 | - | LOC_Os12g27960 | Os12g0465100 | - | Detail |
| C2H12g28215 | 12:14,445,092-14,450,813 | - | C1H12g17057 | CX12g018630 | LOC_Os12g27994 | Os12g0465700 | DEC, dec*, dec | Detail |
| C2H12g24524 | 12:14,451,981-14,452,739 | - | C1H12g19519 | CX12g015187 | LOC_Os12g27994 | Os12g0465800 | - | Detail |
| C2H12g19909 | 12:14,495,204-14,497,717 | - | C1H12g26205 | CX12g017176 | LOC_Os11g28740 | Os06g0588450 | - | Detail |
| C2H12g22145 | 12:14,509,734-14,510,078 | + | C1H12g27314 | - | LOC_Os12g28090 | Os12g0467200 | - | Detail |
| C2H12g01579 | 12:14,513,303-14,514,457 | + | C1H12g20841 | CX12g015667 | LOC_Os12g28090 | Os12g0467200 | - | Detail |
| C2H12g20179 | 12:14,515,142-14,522,387 | - | C1H12g25561 | CX12g017740 | LOC_Os12g28100 | Os12g0467300 | - | Detail |
| C2H12g17782 | 12:14,546,370-14,547,905 | + | C1H12g05419 | CX12g016802 | LOC_Os12g28137 | Os12g0467700 | - | Detail |
| C2H12g27812 | 12:14,584,350-14,587,763 | + | C1H12g11838 | CX12g016836 | LOC_Os12g28260 | Os12g0468500 | OsCNGC5 | Detail |
| C2H12g16369 | 12:14,587,803-14,594,221 | - | C1H12g15040 | CX12g017240 | LOC_Os12g28270 | Os12g0468600 | - | Detail |
| C2H12g16438 | 12:14,614,487-14,618,504 | + | C1H12g25201 | CX12g017257 | LOC_Os02g17020 | - | - | Detail |
| C2H12g21911 | 12:14,654,850-14,656,373 | - | C1H12g09824 | CX12g016867 | LOC_Os12g28177 | Os12g0470700 | - | Detail |
| C2H12g20584 | 12:14,685,650-14,686,165 | + | C1H12g10027 | CX12g015400 | LOC_Os12g28750 | Os12g0472500 | OsTDL1A, MIL2 | Detail |
| C2H12g07430 | 12:14,709,709-14,712,096 | - | C1H12g13184 | CX12g015433 | LOC_Os12g28770 | Os12g0472800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |