| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g15751 | 3:5,984,629-5,989,313 | - | C2H3g22097 | CX3g027410 | LOC_Os03g12680 | Os03g0227900 | - | Detail |
| C1H3g25563 | 3:6,001,188-6,002,188 | - | C2H3g16447 | CX3g026331 | LOC_Os03g12700 | Os03g0228200 | - | Detail |
| C1H3g16232 | 3:6,005,101-6,007,425 | + | C2H3g25355 | CX3g026814 | LOC_Os03g12710 | Os03g0228400 | - | Detail |
| C1H3g10418 | 3:6,009,448-6,009,668 | - | - | CX3g025837 | - | - | - | Detail |
| C1H3g23512 | 3:6,032,384-6,035,395 | + | C2H3g13539 | CX3g031224 | LOC_Os03g12720 | Os03g0228500 | - | Detail |
| C1H3g12564 | 3:6,049,802-6,053,627 | - | C2H3g13159 | CX3g027642 | LOC_Os03g12730 | Os03g0228800 | OsBRR1 | Detail |
| C1H3g01094 | 3:6,064,388-6,065,508 | - | C2H3g13186 | CX3g028683 | LOC_Os03g12760 | Os03g0229100 | - | Detail |
| C1H3g22208 | 3:6,091,929-6,094,842 | - | C2H3g28054 | CX3g029657 | LOC_Os03g12790 | Os03g0229500 | GS3.1 | Detail |
| C1H3g02835 | 3:6,102,839-6,108,243 | - | C2H3g29189 | CX3g031223 | - | Os03g0229575 | - | Detail |
| C1H3g05308 | 3:6,110,884-6,114,139 | - | C2H3g27019 | CX3g025778 | LOC_Os03g12810 | Os03g0229600 | - | Detail |
| C1H3g12624 | 3:6,115,043-6,115,252 | - | C2H3g25429 | - | - | - | - | Detail |
| C1H3g02612 | 3:6,134,243-6,136,920 | + | C2H3g25845 | CX3g029726 | LOC_Os03g12820 | Os03g0230300 | - | Detail |
| C1H3g04395 | 3:6,138,850-6,139,179 | - | C2H3g14412 | CX3g025129 | - | - | - | Detail |
| C1H3g30651 | 3:6,141,034-6,146,413 | + | C2H3g19351 | CX3g029537 | LOC_Os03g12840 | Os03g0230500 | DSM3, DSM3/OsITPK2, OsITL1, OsITPK2 | Detail |
| C1H3g20871 | 3:6,174,292-6,175,674 | + | C2H3g08152 | CX3g028083 | LOC_Os03g12860 | Os03g0231150 | - | Detail |
| C1H3g09365 | 3:6,197,066-6,199,458 | + | C2H3g24795 | CX3g026479 | LOC_Os03g12890 | Os03g0231600 | OsBCAT2 | Detail |
| C1H3g15109 | 3:6,202,066-6,205,181 | - | C2H3g23260 | CX3g029672 | LOC_Os03g12900 | Os03g0231700 | - | Detail |
| C1H3g26830 | 3:6,206,150-6,211,305 | - | C2H3g25882 | CX3g029672 | LOC_Os03g12910 | Os03g0231800 | - | Detail |
| C1H3g13331 | 3:6,228,148-6,231,008 | - | C2H3g00833 | CX3g027611 | LOC_Os03g12930 | Os03g0231900 | - | Detail |
| C1H3g17846 | 3:6,234,174-6,236,190 | - | C2H3g09594 | CX3g030152 | LOC_Os03g12940 | Os03g0231950 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g06001 | 9:17,937,130-17,938,065 | + | C1H9g06898 | CX9g055639 | LOC_Os09g36760 | Os09g0538700 | - | Detail |
| C2H9g27815 | 9:17,938,103-17,941,043 | + | C1H9g29591 | CX9g055639 | LOC_Os09g36760 | Os09g0538700 | - | Detail |
| C2H9g20614 | 9:17,941,495-17,947,247 | - | C1H9g06893 | CX9g055160 | LOC_Os09g36770 | Os09g0538800 | - | Detail |
| C2H9g01552 | 9:17,953,597-17,957,003 | - | C1H9g17651 | CX9g056861 | LOC_Os09g36800 | Os09g0539100 | - | Detail |
| C2H9g21684 | 9:17,958,733-17,963,690 | + | C1H9g23415 | CX9g056453 | LOC_Os09g36810 | Os09g0539200 | - | Detail |
| C2H9g12389 | 9:17,966,203-17,969,309 | + | C1H9g18894 | CX9g057403 | LOC_Os09g36820 | Os09g0539400 | - | Detail |
| C2H9g19569 | 9:17,969,938-17,972,241 | - | C1H9g22954 | CX9g056828 | LOC_Os09g36830 | Os09g0539500 | - | Detail |
| C2H9g22706 | 9:17,980,196-17,982,727 | - | C1H9g21022 | CX9g055116 | LOC_Os09g36860 | Os09g0539800 | - | Detail |
| C2H9g18485 | 9:17,990,937-17,992,638 | - | C1H9g06205 | CX9g056143 | LOC_Os09g36880 | Os09g0540400 | - | Detail |
| C2H9g22888 | 9:17,995,634-18,000,826 | + | C1H9g23063 | CX9g055896 | LOC_Os09g36900 | Os09g0540600 | - | Detail |
| C2H9g26403 | 9:18,013,700-18,014,569 | + | C1H9g23615 | CX9g055766 | LOC_Os09g36910 | Os09g0540800 | BZIP77, OsbZIP77, OsFD1 | Detail |
| C2H9g30227 | 9:18,025,980-18,029,983 | - | C1H9g26475 | CX9g055175 | LOC_Os09g36920 | Os09g0540900 | - | Detail |
| C2H9g19063 | 9:18,035,611-18,037,025 | + | C1H9g19249 | CX9g056388 | LOC_Os09g36930 | Os09g0541000 | - | Detail |
| C2H9g09532 | 9:18,038,884-18,039,547 | - | C1H9g27842 | CX9g057449 | LOC_Os09g36940 | Os09g0541100 | - | Detail |
| C2H9g22675 | 9:18,040,226-18,040,450 | - | C1H9g12978 | - | - | - | - | Detail |
| C2H9g14047 | 9:18,056,908-18,058,988 | - | C1H9g05693 | CX9g055205 | LOC_Os09g36976 | Os09g0541500 | - | Detail |
| C2H9g00965 | 9:18,061,340-18,061,996 | - | C1H9g25058 | CX9g056518 | LOC_Os09g36982 | Os09g0541600 | - | Detail |
| C2H9g20569 | 9:18,063,244-18,064,761 | + | C1H9g02735 | CX9g058033 | LOC_Os09g36990 | Os09g0541700 | - | Detail |
| C2H9g19893 | 9:18,065,227-18,068,667 | - | C1H9g18787 | CX9g055298 | LOC_Os09g37000 | Os09g0541900 | - | Detail |
| C2H9g10407 | 9:18,070,223-18,073,742 | - | C1H9g03436 | CX9g056735 | LOC_Os09g37006 | Os09g0542000 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |