| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g15751 | 3:5,984,629-5,989,313 | - | C2H3g22097 | CX3g027410 | LOC_Os03g12680 | Os03g0227900 | - | Detail |
| C1H3g25563 | 3:6,001,188-6,002,188 | - | C2H3g16447 | CX3g026331 | LOC_Os03g12700 | Os03g0228200 | - | Detail |
| C1H3g16232 | 3:6,005,101-6,007,425 | + | C2H3g25355 | CX3g026814 | LOC_Os03g12710 | Os03g0228400 | - | Detail |
| C1H3g10418 | 3:6,009,448-6,009,668 | - | - | CX3g025837 | - | - | - | Detail |
| C1H3g23512 | 3:6,032,384-6,035,395 | + | C2H3g13539 | CX3g031224 | LOC_Os03g12720 | Os03g0228500 | - | Detail |
| C1H3g12564 | 3:6,049,802-6,053,627 | - | C2H3g13159 | CX3g027642 | LOC_Os03g12730 | Os03g0228800 | OsBRR1 | Detail |
| C1H3g01094 | 3:6,064,388-6,065,508 | - | C2H3g13186 | CX3g028683 | LOC_Os03g12760 | Os03g0229100 | - | Detail |
| C1H3g22208 | 3:6,091,929-6,094,842 | - | C2H3g28054 | CX3g029657 | LOC_Os03g12790 | Os03g0229500 | GS3.1 | Detail |
| C1H3g02835 | 3:6,102,839-6,108,243 | - | C2H3g29189 | CX3g031223 | - | Os03g0229575 | - | Detail |
| C1H3g05308 | 3:6,110,884-6,114,139 | - | C2H3g27019 | CX3g025778 | LOC_Os03g12810 | Os03g0229600 | - | Detail |
| C1H3g12624 | 3:6,115,043-6,115,252 | - | C2H3g25429 | - | - | - | - | Detail |
| C1H3g02612 | 3:6,134,243-6,136,920 | + | C2H3g25845 | CX3g029726 | LOC_Os03g12820 | Os03g0230300 | - | Detail |
| C1H3g04395 | 3:6,138,850-6,139,179 | - | C2H3g14412 | CX3g025129 | - | - | - | Detail |
| C1H3g30651 | 3:6,141,034-6,146,413 | + | C2H3g19351 | CX3g029537 | LOC_Os03g12840 | Os03g0230500 | DSM3, DSM3/OsITPK2, OsITL1, OsITPK2 | Detail |
| C1H3g20871 | 3:6,174,292-6,175,674 | + | C2H3g08152 | CX3g028083 | LOC_Os03g12860 | Os03g0231150 | - | Detail |
| C1H3g09365 | 3:6,197,066-6,199,458 | + | C2H3g24795 | CX3g026479 | LOC_Os03g12890 | Os03g0231600 | OsBCAT2 | Detail |
| C1H3g15109 | 3:6,202,066-6,205,181 | - | C2H3g23260 | CX3g029672 | LOC_Os03g12900 | Os03g0231700 | - | Detail |
| C1H3g26830 | 3:6,206,150-6,211,305 | - | C2H3g25882 | CX3g029672 | LOC_Os03g12910 | Os03g0231800 | - | Detail |
| C1H3g13331 | 3:6,228,148-6,231,008 | - | C2H3g00833 | CX3g027611 | LOC_Os03g12930 | Os03g0231900 | - | Detail |
| C1H3g17846 | 3:6,234,174-6,236,190 | - | C2H3g09594 | CX3g030152 | LOC_Os03g12940 | Os03g0231950 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H8g13560 | 8:19,986,823-19,992,645 | + | C1H8g07439 | CX8g052511 | - | - | - | Detail |
| C2H8g14922 | 8:19,993,084-20,000,538 | - | C1H8g14353 | CX8g054195 | LOC_Os08g37350 | Os08g0478500 | - | Detail |
| C2H8g13231 | 8:20,012,415-20,013,401 | - | C1H8g26214 | CX8g051954 | LOC_Os08g37370 | Os08g0478700 | - | Detail |
| C2H8g10223 | 8:20,020,785-20,026,313 | - | C1H8g21060 | CX8g051387 | LOC_Os08g37380 | Os08g0478800 | - | Detail |
| C2H8g27062 | 8:20,043,309-20,045,662 | + | C1H8g24275 | CX8g052491 | LOC_Os08g37390 | Os08g0479300 | - | Detail |
| C2H8g11298 | 8:20,059,772-20,060,650 | - | C1H8g30791 | CX8g054208 | LOC_Os08g37400 | Os08g0479400 | OsZHD2 | Detail |
| C2H8g07236 | 8:20,093,212-20,093,790 | + | C1H8g13479 | - | - | - | - | Detail |
| C2H8g02187 | 8:20,095,892-20,100,289 | + | C1H8g07368 | CX8g054368 | LOC_Os08g37432 | Os08g0480000 | - | Detail |
| C2H8g16239 | 8:20,100,729-20,105,120 | - | C1H8g08337 | CX8g051529 | LOC_Os08g37444 | Os08g0480100 | - | Detail |
| C2H8g07875 | 8:20,106,802-20,108,665 | - | C1H8g11569 | CX8g051751 | LOC_Os08g37456 | Os08g0480200 | - | Detail |
| C2H8g16349 | 8:20,113,972-20,115,474 | - | C1H8g10824 | CX8g052667 | LOC_Os08g37470 | Os08g0480400 | - | Detail |
| C2H8g25194 | 8:20,126,954-20,128,898 | - | C1H8g07548 | CX8g051045 | LOC_Os08g37480 | Os08g0480500 | - | Detail |
| C2H8g30037 | 8:20,131,391-20,133,619 | + | C1H8g02822 | CX8g051962 | LOC_Os08g37490 | Os08g0480800 | - | Detail |
| C2H8g08023 | 8:20,137,989-20,140,021 | + | C1H8g14557 | CX8g054049 | LOC_Os08g37500 | Os08g0481100 | - | Detail |
| C2H8g29374 | 8:20,141,153-20,143,417 | - | C1H8g18859 | CX8g052069 | LOC_Os08g37520 | Os08g0481000 | - | Detail |
| C2H8g08557 | 8:20,145,848-20,148,248 | - | C1H8g20776 | CX8g050655 | LOC_Os08g37570 | Os08g0481200 | - | Detail |
| C2H8g04351 | 8:20,160,511-20,162,284 | - | C1H8g18729 | CX8g053322 | LOC_Os08g37580 | Os08g0481400 | - | Detail |
| C2H8g16610 | 8:20,171,335-20,171,751 | + | C1H8g30578 | - | - | - | - | Detail |
| C2H8g30027 | 8:20,172,863-20,177,646 | - | C1H8g11865 | CX8g051877 | LOC_Os08g37600 | Os08g0481800 | - | Detail |
| C2H8g21498 | 8:20,179,564-20,180,574 | - | C1H8g01806 | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |