| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g15751 | 3:5,984,629-5,989,313 | - | C2H3g22097 | CX3g027410 | LOC_Os03g12680 | Os03g0227900 | - | Detail |
| C1H3g25563 | 3:6,001,188-6,002,188 | - | C2H3g16447 | CX3g026331 | LOC_Os03g12700 | Os03g0228200 | - | Detail |
| C1H3g16232 | 3:6,005,101-6,007,425 | + | C2H3g25355 | CX3g026814 | LOC_Os03g12710 | Os03g0228400 | - | Detail |
| C1H3g10418 | 3:6,009,448-6,009,668 | - | - | CX3g025837 | - | - | - | Detail |
| C1H3g23512 | 3:6,032,384-6,035,395 | + | C2H3g13539 | CX3g031224 | LOC_Os03g12720 | Os03g0228500 | - | Detail |
| C1H3g12564 | 3:6,049,802-6,053,627 | - | C2H3g13159 | CX3g027642 | LOC_Os03g12730 | Os03g0228800 | OsBRR1 | Detail |
| C1H3g01094 | 3:6,064,388-6,065,508 | - | C2H3g13186 | CX3g028683 | LOC_Os03g12760 | Os03g0229100 | - | Detail |
| C1H3g22208 | 3:6,091,929-6,094,842 | - | C2H3g28054 | CX3g029657 | LOC_Os03g12790 | Os03g0229500 | GS3.1 | Detail |
| C1H3g02835 | 3:6,102,839-6,108,243 | - | C2H3g29189 | CX3g031223 | - | Os03g0229575 | - | Detail |
| C1H3g05308 | 3:6,110,884-6,114,139 | - | C2H3g27019 | CX3g025778 | LOC_Os03g12810 | Os03g0229600 | - | Detail |
| C1H3g12624 | 3:6,115,043-6,115,252 | - | C2H3g25429 | - | - | - | - | Detail |
| C1H3g02612 | 3:6,134,243-6,136,920 | + | C2H3g25845 | CX3g029726 | LOC_Os03g12820 | Os03g0230300 | - | Detail |
| C1H3g04395 | 3:6,138,850-6,139,179 | - | C2H3g14412 | CX3g025129 | - | - | - | Detail |
| C1H3g30651 | 3:6,141,034-6,146,413 | + | C2H3g19351 | CX3g029537 | LOC_Os03g12840 | Os03g0230500 | DSM3, DSM3/OsITPK2, OsITL1, OsITPK2 | Detail |
| C1H3g20871 | 3:6,174,292-6,175,674 | + | C2H3g08152 | CX3g028083 | LOC_Os03g12860 | Os03g0231150 | - | Detail |
| C1H3g09365 | 3:6,197,066-6,199,458 | + | C2H3g24795 | CX3g026479 | LOC_Os03g12890 | Os03g0231600 | OsBCAT2 | Detail |
| C1H3g15109 | 3:6,202,066-6,205,181 | - | C2H3g23260 | CX3g029672 | LOC_Os03g12900 | Os03g0231700 | - | Detail |
| C1H3g26830 | 3:6,206,150-6,211,305 | - | C2H3g25882 | CX3g029672 | LOC_Os03g12910 | Os03g0231800 | - | Detail |
| C1H3g13331 | 3:6,228,148-6,231,008 | - | C2H3g00833 | CX3g027611 | LOC_Os03g12930 | Os03g0231900 | - | Detail |
| C1H3g17846 | 3:6,234,174-6,236,190 | - | C2H3g09594 | CX3g030152 | LOC_Os03g12940 | Os03g0231950 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H6g23514 | 6:16,348,198-16,348,907 | - | C1H6g20688 | CX6g045905 | LOC_Os06g32600 | Os06g0509900 | - | Detail |
| C2H6g24462 | 6:16,431,579-16,432,280 | - | C1H6g10133 | CX6g045771 | LOC_Os06g32600 | Os06g0514800 | OsThi9 | Detail |
| C2H6g24549 | 6:16,457,623-16,458,351 | - | C1H6g30221 | CX6g041463 | LOC_Os06g32600 | Os06g0514800 | OsThi9 | Detail |
| C2H6g14991 | 6:16,483,688-16,484,416 | - | C1H6g30221 | CX6g045619 | LOC_Os06g32600 | Os06g0514800 | OsThi9 | Detail |
| C2H6g23945 | 6:16,509,772-16,510,500 | - | C1H6g30221 | CX6g045907 | LOC_Os06g32600 | Os06g0514800 | OsThi9 | Detail |
| C2H6g16104 | 6:16,538,260-16,538,988 | - | C1H6g15287 | CX6g045907 | LOC_Os06g32600 | Os06g0514800 | OsThi9 | Detail |
| C2H6g27735 | 6:16,544,055-16,544,504 | - | C1H11g18273 | - | - | - | - | Detail |
| C2H6g13109 | 6:16,552,095-16,552,876 | - | C1H6g28912 | CX6g045771 | LOC_Os06g32600 | Os06g0514800 | OsThi9 | Detail |
| C2H6g11325 | 6:16,555,595-16,556,742 | - | C1H6g14560 | CX6g045907 | LOC_Os06g32600 | Os06g0514800 | OsThi9 | Detail |
| C2H6g13030 | 6:16,568,032-16,568,670 | - | C1H6g25233 | CX6g045771 | LOC_Os06g32600 | Os06g0514800 | OsThi9 | Detail |
| C2H6g03154 | 6:16,602,458-16,603,353 | - | - | - | - | - | - | Detail |
| C2H6g27631 | 6:16,610,374-16,611,018 | - | C1H6g12241 | CX6g045360 | LOC_Os06g32600 | Os06g0517700 | OsTHION15 | Detail |
| C2H6g21791 | 6:16,626,079-16,626,484 | + | C1H6g12479 | CX6g045309 | - | Os06g0518300 | - | Detail |
| C2H6g04594 | 6:16,651,278-16,651,469 | + | C1H6g27321 | - | LOC_Os06g32720 | Os06g0519400 | - | Detail |
| C2H6g10214 | 6:16,651,569-16,654,254 | + | C1H6g27321 | CX6g042017 | LOC_Os06g32720 | Os06g0519400 | - | Detail |
| C2H6g10213 | 6:16,659,675-16,661,257 | + | C1H6g06224 | CX6g042017 | LOC_Os06g32730 | Os06g0520600 | - | Detail |
| C2H6g21865 | 6:16,673,501-16,674,029 | + | - | CX6g042771 | - | - | - | Detail |
| C2H6g19194 | 6:16,681,643-16,691,005 | + | C1H6g09724 | CX6g043106 | LOC_Os06g32780 | Os06g0519700 | - | Detail |
| C2H6g13541 | 6:16,693,260-16,695,415 | + | C1H6g01033 | - | - | - | - | Detail |
| C2H6g07675 | 6:16,702,638-16,707,866 | + | C1H6g06224 | CX6g043682 | LOC_Os06g32860 | Os06g0520600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |