| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g26939 | 3:5,827,730-5,829,663 | + | C2H3g21341 | CX3g025280 | LOC_Os03g12440 | - | - | Detail |
| C1H3g23318 | 3:5,830,907-5,831,606 | + | C2H3g03359 | CX3g025280 | LOC_Os03g12440 | - | - | Detail |
| C1H3g17135 | 3:5,832,929-5,841,582 | + | C2H3g24748 | CX3g030046 | LOC_Os03g12450 | Os03g0225500 | - | Detail |
| C1H3g25680 | 3:5,842,305-5,848,977 | + | C2H3g09129 | CX3g028144 | LOC_Os03g12460 | Os03g0225600 | - | Detail |
| C1H3g10808 | 3:5,850,410-5,855,399 | + | C2H3g02566 | CX3g025098 | LOC_Os03g12470 | Os03g0225700 | WAK25, OsWAK25 | Detail |
| C1H3g31142 | 3:5,859,958-5,861,394 | + | C2H3g16646 | CX3g026072 | LOC_Os03g12500 | Os03g0225900 | - | Detail |
| C1H3g02465 | 3:5,868,214-5,869,065 | - | C2H3g10692 | CX3g026153 | LOC_Os03g12510 | Os03g0226200 | Hb2, OsPgb1.2 | Detail |
| C1H3g31559 | 3:5,870,535-5,872,232 | + | C2H3g15869 | CX3g028573 | LOC_Os03g12520 | Os03g0226300 | - | Detail |
| C1H3g14266 | 3:5,872,381-5,872,951 | + | C2H3g08794 | CX3g028573 | LOC_Os03g12520 | Os03g0226300 | - | Detail |
| C1H3g15877 | 3:5,878,805-5,883,431 | + | C2H3g29082 | CX3g027606 | LOC_Os03g12530 | Os03g0226400 | - | Detail |
| C1H3g27940 | 3:5,889,656-5,896,396 | + | C2H3g13286 | CX3g025975 | LOC_Os03g12550 | Os03g0226600 | - | Detail |
| C1H3g15687 | 3:5,897,248-5,899,040 | - | C2H3g30568 | CX3g027982 | LOC_Os03g12560 | Os03g0226700 | - | Detail |
| C1H3g18854 | 3:5,900,286-5,906,068 | + | C2H3g00790 | CX3g024984 | LOC_Os03g12570 | Os03g0226800 | CMT3b | Detail |
| C1H3g26728 | 3:5,907,227-5,910,038 | + | C2H3g22427 | CX3g027871 | LOC_Os03g12570 | Os03g0226901 | - | Detail |
| C1H3g26232 | 3:5,913,957-5,921,379 | + | C2H3g07335 | CX3g030829 | LOC_Os03g12590 | Os03g0227000 | - | Detail |
| C1H3g22048 | 3:5,923,945-5,931,937 | + | C2H3g16667 | CX3g026050 | LOC_Os03g12610 | Os03g0227300 | - | Detail |
| C1H3g19915 | 3:5,932,012-5,935,453 | - | C2H3g04602 | CX3g031339 | LOC_Os03g12620 | Os03g0227400 | - | Detail |
| C1H3g13701 | 3:5,949,947-5,953,406 | + | C2H3g27028 | CX3g027265 | LOC_Os03g12630 | Os03g0227500 | - | Detail |
| C1H3g10637 | 3:5,969,729-5,976,810 | + | C2H3g25912 | CX3g027504 | LOC_Os03g12660 | Os03g0227700 | OsDWF4, OsDWARF4, CYP90B2 | Detail |
| C1H3g02053 | 3:5,978,556-5,981,087 | + | - | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g17042 | 4:20,797,046-20,800,398 | - | C1H4g31403 | CX4g036343 | LOC_Os04g40650 | Os04g0482700 | - | Detail |
| C2H4g09234 | 4:20,801,204-20,805,683 | - | C1H4g18067 | CX4g032655 | LOC_Os04g40660 | Os04g0482800 | - | Detail |
| C2H4g06345 | 4:20,806,844-20,811,942 | - | C1H4g04900 | CX4g032113 | LOC_Os04g40670 | Os04g0482900 | - | Detail |
| C2H4g21173 | 4:20,815,477-20,817,018 | + | C1H4g26441 | CX4g035699 | LOC_Os04g40680 | Os04g0483000 | - | Detail |
| C2H4g26991 | 4:20,827,642-20,832,109 | + | C1H4g10284 | CX4g036074 | LOC_Os04g40700 | Os04g0483200 | - | Detail |
| C2H4g13170 | 4:20,832,265-20,838,730 | - | C1H4g11147 | CX4g035331 | LOC_Os04g40720 | Os04g0483400 | OsSUBSrP1 | Detail |
| C2H4g15487 | 4:20,840,358-20,843,372 | - | C1H4g14843 | CX4g031522 | LOC_Os04g40730 | Os04g0483500 | KCR1, OsKCR1, WSL3 | Detail |
| C2H4g03640 | 4:20,845,395-20,852,309 | - | C1H4g00579 | CX4g033297 | LOC_Os04g40740 | Os04g0483600 | - | Detail |
| C2H4g28314 | 4:20,861,023-20,862,867 | - | C1H4g22602 | CX4g032598 | LOC_Os04g40760 | Os04g0651600 | - | Detail |
| C2H4g03392 | 4:20,871,565-20,879,184 | + | C1H4g19344 | CX4g034516 | LOC_Os04g40830 | Os04g0484800 | - | Detail |
| C2H4g06907 | 4:20,879,589-20,882,951 | - | C1H4g05361 | CX4g032355 | LOC_Os04g40840 | Os04g0484900 | OsELP3 | Detail |
| C2H4g29472 | 4:20,883,277-20,885,991 | + | C1H4g09149 | CX4g035127 | LOC_Os04g40850 | Os04g0485000 | OsRpn7 | Detail |
| C2H4g14931 | 4:20,886,151-20,890,107 | - | C1H4g21128 | CX4g034685 | LOC_Os04g40860 | Os04g0485100 | - | Detail |
| C2H4g07215 | 4:20,894,500-20,897,610 | + | C1H4g16250 | CX4g032126 | LOC_Os04g40870 | Os04g0485200 | - | Detail |
| C2H4g19727 | 4:20,901,679-20,907,974 | + | C1H4g02206 | CX4g032384 | LOC_Os04g40874 | Os04g0485300 | - | Detail |
| C2H4g08090 | 4:20,902,491-20,910,357 | - | C1H4g05914 | CX4g033307 | LOC_Os04g40880 | Os04g0485400 | - | Detail |
| C2H4g07501 | 4:20,911,718-20,913,987 | + | C1H8g13693 | CX4g032119 | LOC_Os04g40900 | Os04g0485700 | - | Detail |
| C2H4g25528 | 4:20,915,296-20,918,861 | - | C1H4g23020 | CX4g031550 | LOC_Os04g40910 | Os04g0485800 | - | Detail |
| C2H4g07670 | 4:20,925,719-20,927,142 | + | C1H4g01634 | CX4g034598 | LOC_Os04g40920 | Os04g0486300 | - | Detail |
| C2H4g08395 | 4:20,928,040-20,932,453 | + | C1H4g05039 | CX4g034598 | LOC_Os04g40930 | Os04g0486400 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |