| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g26939 | 3:5,827,730-5,829,663 | + | C2H3g21341 | CX3g025280 | LOC_Os03g12440 | - | - | Detail |
| C1H3g23318 | 3:5,830,907-5,831,606 | + | C2H3g03359 | CX3g025280 | LOC_Os03g12440 | - | - | Detail |
| C1H3g17135 | 3:5,832,929-5,841,582 | + | C2H3g24748 | CX3g030046 | LOC_Os03g12450 | Os03g0225500 | - | Detail |
| C1H3g25680 | 3:5,842,305-5,848,977 | + | C2H3g09129 | CX3g028144 | LOC_Os03g12460 | Os03g0225600 | - | Detail |
| C1H3g10808 | 3:5,850,410-5,855,399 | + | C2H3g02566 | CX3g025098 | LOC_Os03g12470 | Os03g0225700 | WAK25, OsWAK25 | Detail |
| C1H3g31142 | 3:5,859,958-5,861,394 | + | C2H3g16646 | CX3g026072 | LOC_Os03g12500 | Os03g0225900 | - | Detail |
| C1H3g02465 | 3:5,868,214-5,869,065 | - | C2H3g10692 | CX3g026153 | LOC_Os03g12510 | Os03g0226200 | Hb2, OsPgb1.2 | Detail |
| C1H3g31559 | 3:5,870,535-5,872,232 | + | C2H3g15869 | CX3g028573 | LOC_Os03g12520 | Os03g0226300 | - | Detail |
| C1H3g14266 | 3:5,872,381-5,872,951 | + | C2H3g08794 | CX3g028573 | LOC_Os03g12520 | Os03g0226300 | - | Detail |
| C1H3g15877 | 3:5,878,805-5,883,431 | + | C2H3g29082 | CX3g027606 | LOC_Os03g12530 | Os03g0226400 | - | Detail |
| C1H3g27940 | 3:5,889,656-5,896,396 | + | C2H3g13286 | CX3g025975 | LOC_Os03g12550 | Os03g0226600 | - | Detail |
| C1H3g15687 | 3:5,897,248-5,899,040 | - | C2H3g30568 | CX3g027982 | LOC_Os03g12560 | Os03g0226700 | - | Detail |
| C1H3g18854 | 3:5,900,286-5,906,068 | + | C2H3g00790 | CX3g024984 | LOC_Os03g12570 | Os03g0226800 | CMT3b | Detail |
| C1H3g26728 | 3:5,907,227-5,910,038 | + | C2H3g22427 | CX3g027871 | LOC_Os03g12570 | Os03g0226901 | - | Detail |
| C1H3g26232 | 3:5,913,957-5,921,379 | + | C2H3g07335 | CX3g030829 | LOC_Os03g12590 | Os03g0227000 | - | Detail |
| C1H3g22048 | 3:5,923,945-5,931,937 | + | C2H3g16667 | CX3g026050 | LOC_Os03g12610 | Os03g0227300 | - | Detail |
| C1H3g19915 | 3:5,932,012-5,935,453 | - | C2H3g04602 | CX3g031339 | LOC_Os03g12620 | Os03g0227400 | - | Detail |
| C1H3g13701 | 3:5,949,947-5,953,406 | + | C2H3g27028 | CX3g027265 | LOC_Os03g12630 | Os03g0227500 | - | Detail |
| C1H3g10637 | 3:5,969,729-5,976,810 | + | C2H3g25912 | CX3g027504 | LOC_Os03g12660 | Os03g0227700 | OsDWF4, OsDWARF4, CYP90B2 | Detail |
| C1H3g02053 | 3:5,978,556-5,981,087 | + | - | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g24005 | 4:15,479,801-15,484,807 | + | C1H4g06621 | CX4g034126 | LOC_Os04g30910 | Os04g0378200 | - | Detail |
| C2H4g16277 | 4:15,495,133-15,495,588 | + | - | - | - | - | - | Detail |
| C2H4g13399 | 4:15,495,904-15,499,710 | + | C1H4g07551 | CX4g031629 | LOC_Os04g30930 | Os04g0378575 | - | Detail |
| C2H4g06070 | 4:15,516,493-15,526,351 | + | C1H4g12695 | CX4g033147 | LOC_Os04g31000 | Os04g0379300 | - | Detail |
| C2H4g14670 | 4:15,530,554-15,532,414 | - | C1H4g10583 | CX4g036303 | LOC_Os04g31010 | Os04g0379400 | - | Detail |
| C2H4g22426 | 4:15,533,462-15,537,967 | + | - | CX4g033620 | LOC_Os04g31020 | - | - | Detail |
| C2H4g21030 | 4:15,544,187-15,545,151 | + | C1H4g14850 | CX4g036222 | LOC_Os04g31030 | Os04g0379600 | - | Detail |
| C2H4g09470 | 4:15,546,416-15,549,076 | - | C1H4g24339 | CX4g032400 | LOC_Os04g31040 | Os04g0379700 | OsVDE | Detail |
| C2H4g26874 | 4:15,549,630-15,554,237 | + | C1H4g13382 | CX4g033149 | LOC_Os04g31050 | Os04g0379800 | - | Detail |
| C2H4g26825 | 4:15,555,416-15,559,471 | - | C1H4g26878 | CX4g036511 | LOC_Os04g31070 | Os04g0379900 | - | Detail |
| C2H4g19037 | 4:15,585,395-15,587,417 | + | C1H4g30575 | CX4g035040 | LOC_Os04g31110 | Os04g0380200 | - | Detail |
| C2H4g14356 | 4:15,589,235-15,590,599 | - | C1H4g22670 | CX4g035366 | LOC_Os04g31120 | Os04g0380300 | - | Detail |
| C2H4g11769 | 4:15,623,007-15,625,875 | - | C1H4g10860 | CX4g033366 | - | - | - | Detail |
| C2H4g01312 | 4:15,719,234-15,725,018 | - | C1H4g02661 | CX4g031408 | LOC_Os04g31170 | Os04g0380800 | - | Detail |
| C2H4g29753 | 4:15,738,409-15,747,972 | - | C1H4g01385 | CX4g033271 | LOC_Os04g31190 | Os04g0381000 | - | Detail |
| C2H4g17810 | 4:15,752,359-15,757,374 | + | C1H4g29700 | CX4g035253 | LOC_Os04g31210 | Os04g0381100 | - | Detail |
| C2H4g00277 | 4:15,758,237-15,763,094 | + | C1H4g17691 | CX4g035237 | LOC_Os04g31240 | Os04g0381400 | - | Detail |
| C2H4g17534 | 4:15,764,695-15,765,090 | + | C1H4g16213 | CX4g031369 | LOC_Os04g31250 | Os04g0381500 | - | Detail |
| C2H4g29102 | 4:15,768,636-15,773,955 | + | C1H4g09513 | CX4g035133 | LOC_Os04g31270 | Os04g0381600 | - | Detail |
| C2H4g16108 | 4:15,787,724-15,789,526 | + | C1H4g27606 | CX4g034109 | LOC_Os04g31290 | Os04g0381700 | OsbHLH156 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |