| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g11455 | 3:5,667,589-5,676,280 | - | C2H3g25606 | CX3g031100 | LOC_Os03g12160 | Os03g0221800 | - | Detail |
| C1H3g05328 | 3:5,679,033-5,682,233 | - | C2H3g28200 | CX3g028642 | LOC_Os03g12180 | Os03g0222100 | - | Detail |
| C1H3g22084 | 3:5,683,225-5,684,571 | - | - | CX1g001382 | - | - | - | Detail |
| C1H3g10920 | 3:5,689,450-5,690,709 | + | C2H3g21744 | CX3g029448 | LOC_Os03g12210 | Os03g0222500 | - | Detail |
| C1H3g07232 | 3:5,698,966-5,701,249 | + | C2H3g09344 | CX3g031317 | LOC_Os03g12230 | Os03g0222600 | - | Detail |
| C1H3g04972 | 3:5,702,621-5,707,780 | + | C2H3g04698 | CX3g028958 | LOC_Os03g12236 | Os03g0222800 | - | Detail |
| C1H3g26972 | 3:5,709,181-5,711,242 | + | C2H3g19892 | CX3g027447 | LOC_Os03g12238 | - | - | Detail |
| C1H3g14957 | 3:5,715,416-5,719,293 | + | C2H3g10667 | CX3g031278 | LOC_Os03g12250 | Os03g0223000 | - | Detail |
| C1H3g14297 | 3:5,724,282-5,725,868 | - | C2H3g29015 | CX3g030840 | LOC_Os03g12260 | Os03g0223100 | CYP94D15, OsCYP94D15 | Detail |
| C1H3g13087 | 3:5,730,852-5,733,610 | + | C2H3g13113 | CX3g029663 | LOC_Os03g12270 | Os03g0223200 | - | Detail |
| C1H3g19225 | 3:5,739,506-5,740,695 | - | C2H3g16993 | CX3g028859 | LOC_Os03g12290 | Os03g0223400 | GLN1;2, OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1 | Detail |
| C1H3g05930 | 3:5,741,048-5,743,366 | - | C2H3g28472 | CX3g028859 | LOC_Os03g12290 | Os03g0223400 | GLN1;2, OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1 | Detail |
| C1H3g02751 | 3:5,747,807-5,755,905 | - | C2H3g01042 | CX3g025777 | LOC_Os03g12300 | Os03g0223700 | - | Detail |
| C1H3g05662 | 3:5,768,070-5,772,723 | + | C2H3g20060 | CX3g029397 | LOC_Os03g12320 | Os03g0223900 | OsLPXC | Detail |
| C1H3g16565 | 3:5,781,460-5,786,781 | + | C2H3g29213 | CX3g029992 | LOC_Os03g12350 | Os03g0224200 | - | Detail |
| C1H3g12418 | 3:5,787,327-5,791,771 | - | C2H3g11335 | CX3g029383 | LOC_Os03g12360 | Os03g0224300 | - | Detail |
| C1H3g18389 | 3:5,803,605-5,807,389 | + | C2H3g05885 | CX3g025920 | LOC_Os03g12370 | Os03g0224700 | - | Detail |
| C1H3g09012 | 3:5,811,317-5,812,336 | - | C2H3g25300 | CX3g025136 | LOC_Os03g12390 | Os03g0225100 | MPKK10.2, OsMKK10-2, MKK10-2D | Detail |
| C1H3g14793 | 3:5,818,975-5,823,594 | - | C2H3g05543 | CX3g027495 | LOC_Os03g12414 | Os03g0225200 | - | Detail |
| C1H3g12506 | 3:5,824,997-5,826,409 | - | C2H3g22350 | CX3g027176 | LOC_Os03g12430 | Os03g0225300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g01047 | 1:129,725-132,219 | + | C1H1g20467 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C2H1g05282 | 1:133,261-138,341 | + | C1H1g21121 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C2H1g27348 | 1:143,367-143,995 | - | C1H1g31375 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C2H1g25360 | 1:144,852-146,855 | - | C1H1g31418 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| C2H1g02276 | 1:150,503-152,335 | + | C1H1g12761 | CX1g002384 | LOC_Os01g01360 | Os01g0103100 | - | Detail |
| C2H1g12532 | 1:154,571-158,924 | - | C1H1g07820 | CX1g006310 | LOC_Os01g01369 | Os01g0103600 | - | Detail |
| C2H1g08358 | 1:160,192-161,694 | + | C1H1g19064 | CX1g002675 | - | Os01g0103700 | - | Detail |
| C2H1g10565 | 1:166,796-169,980 | + | C1H1g29706 | CX1g002638 | LOC_Os01g01390 | Os01g0103800 | - | Detail |
| C2H1g05818 | 1:175,266-179,506 | + | C1H1g17103 | CX1g006100 | LOC_Os01g01400 | Os01g0103900 | - | Detail |
| C2H1g11815 | 1:179,675-182,701 | - | C1H1g12737 | CX1g004046 | LOC_Os01g01410 | Os01g0104000 | - | Detail |
| C2H1g12977 | 1:183,001-187,715 | + | C1H2g23071 | CX1g006059 | LOC_Os01g01420 | Os01g0104100 | - | Detail |
| C2H1g11787 | 1:189,519-190,616 | + | C1H1g14920 | CX1g004345 | LOC_Os01g01430 | Os01g0104200 | OsNAC016 | Detail |
| C2H1g15646 | 1:197,297-201,556 | + | C1H1g01211 | CX1g003727 | LOC_Os01g01450 | Os01g0104400 | - | Detail |
| C2H1g23998 | 1:203,465-203,821 | + | - | CX1g004899 | - | - | - | Detail |
| C2H1g14564 | 1:210,279-211,383 | + | C1H1g10326 | CX1g000326 | LOC_Os01g01470 | Os01g0104500 | OsNAC20 | Detail |
| C2H1g27177 | 1:224,515-228,798 | - | C1H1g16665 | CX1g006184 | LOC_Os01g01484 | Os01g0104600 | - | Detail |
| C2H1g26980 | 1:229,705-232,370 | - | C1H1g16665 | CX1g007181 | LOC_Os01g01484 | Os01g0104600 | - | Detail |
| C2H1g24661 | 1:234,452-241,485 | + | C1H1g14271 | CX1g006176 | LOC_Os01g01510 | Os01g0104800 | - | Detail |
| C2H1g28091 | 1:244,018-248,455 | - | C1H1g14561 | CX1g004009 | LOC_Os01g01520 | Os01g0104900 | - | Detail |
| C2H1g26009 | 1:251,125-255,148 | + | C1H1g25887 | CX1g002864 | LOC_Os01g33040 | Os01g0513900 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |