| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g24567 | 3:5,522,815-5,525,635 | + | C2H3g18755 | CX3g029021 | LOC_Os03g11760 | Os03g0216800 | - | Detail |
| C1H3g18611 | 3:5,529,479-5,534,259 | + | C2H3g21216 | CX3g025795 | LOC_Os03g11770 | Os03g0216900 | - | Detail |
| C1H3g15471 | 3:5,534,782-5,535,195 | - | C2H3g13077 | CX3g025145 | LOC_Os03g11780 | Os03g0217000 | - | Detail |
| C1H3g22547 | 3:5,538,443-5,541,767 | + | C2H3g01791 | CX3g026323 | LOC_Os03g11790 | Os03g0217200 | - | Detail |
| C1H3g25970 | 3:5,546,441-5,552,323 | + | C2H3g17874 | CX3g026533 | LOC_Os03g11890 | Os03g0218300 | - | Detail |
| C1H3g04450 | 3:5,552,712-5,556,996 | - | C2H3g10730 | CX3g031320 | LOC_Os03g11900 | Os03g0218400 | OsMST4 | Detail |
| C1H3g10632 | 3:5,562,561-5,565,745 | - | C2H3g22152 | CX3g030309 | LOC_Os03g11910 | Os03g0218500 | - | Detail |
| C1H3g06308 | 3:5,581,833-5,584,574 | + | C2H3g13924 | CX3g025032 | LOC_Os03g11950 | Os03g0219100 | OsSec14-26 | Detail |
| C1H3g24825 | 3:5,588,094-5,590,828 | - | C2H3g24481 | CX3g027163 | LOC_Os03g11960 | Os03g0219200 | OsCSD3 | Detail |
| C1H3g11590 | 3:5,591,311-5,595,077 | - | C2H3g03285 | CX3g028374 | LOC_Os03g11970 | Os03g0219300 | - | Detail |
| C1H3g20877 | 3:5,595,939-5,598,537 | - | C2H3g25818 | CX3g028318 | LOC_Os03g11980 | Os03g0219400 | - | Detail |
| C1H3g14036 | 3:5,599,980-5,601,479 | + | C2H3g26156 | CX3g029685 | LOC_Os03g11990 | Os03g0219500 | - | Detail |
| C1H3g26472 | 3:5,603,730-5,607,431 | - | C2H3g18310 | CX3g028368 | LOC_Os03g12000 | Os03g0219700 | - | Detail |
| C1H3g15777 | 3:5,608,891-5,613,075 | + | C2H3g00756 | CX3g026437 | LOC_Os03g12010 | Os03g0219800 | - | Detail |
| C1H3g13535 | 3:5,613,615-5,615,733 | + | C2H3g05450 | CX3g028610 | LOC_Os03g12020 | Os03g0219900 | - | Detail |
| C1H3g10915 | 3:5,621,207-5,623,354 | - | C2H3g23972 | CX3g026270 | LOC_Os03g12030 | Os03g0220100 | WSL4, CER6/CUT1, CER6, CUT1, OsCER6 | Detail |
| C1H3g01618 | 3:5,643,998-5,646,450 | + | C2H3g23561 | CX3g025137 | LOC_Os03g12110 | Os03g0221200 | - | Detail |
| C1H3g06610 | 3:5,647,019-5,654,607 | - | C2H3g25327 | CX3g025281 | LOC_Os03g12120 | Os03g0221300 | - | Detail |
| C1H3g09947 | 3:5,657,529-5,661,726 | + | C2H3g25299 | CX3g028100 | LOC_Os03g12140 | Os03g0221500 | - | Detail |
| C1H3g29297 | 3:5,664,798-5,667,335 | + | C2H3g19033 | CX3g026372 | LOC_Os03g12150 | Os03g0221700 | SDRLK-9 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g25029 | 2:25,005,385-25,023,152 | + | C1H2g24437 | CX2g021198 | LOC_Os02g44510 | Os02g0664200 | - | Detail |
| C2H2g14745 | 2:25,024,526-25,045,836 | + | C1H2g10239 | CX2g022591 | LOC_Os02g44520 | Os02g0664300 | - | Detail |
| C2H2g27518 | 2:25,047,262-25,049,473 | - | C1H2g10375 | CX2g021479 | LOC_Os02g44530 | Os02g0664400 | - | Detail |
| C2H2g15995 | 2:25,054,058-25,060,582 | - | C1H2g09205 | CX2g019172 | LOC_Os02g44540 | Os02g0664700 | - | Detail |
| C2H2g14456 | 2:25,063,914-25,068,473 | + | C1H2g31817 | CX2g021823 | LOC_Os02g44570 | Os02g0665200 | - | Detail |
| C2H2g20153 | 2:25,068,624-25,068,929 | - | - | CX2g023011 | - | Os02g0665250 | - | Detail |
| C2H2g24957 | 2:25,071,842-25,074,217 | + | C1H2g16389 | CX2g021474 | LOC_Os02g44590 | Os02g0665300 | - | Detail |
| C2H2g07129 | 2:25,077,136-25,081,678 | + | C1H2g16388 | CX2g024193 | LOC_Os02g44610 | Os02g0665500 | - | Detail |
| C2H2g20045 | 2:25,082,702-25,088,392 | + | C1H2g24778 | CX2g019593 | LOC_Os02g44610 | Os02g0665500 | - | Detail |
| C2H2g27846 | 2:25,083,533-25,088,819 | - | C1H2g10501 | - | - | Os02g0665600 | - | Detail |
| C2H2g20848 | 2:25,094,659-25,097,584 | + | C1H2g05588 | CX2g019966 | LOC_Os02g44630 | Os02g0666200 | - | Detail |
| C2H2g17010 | 2:25,099,045-25,108,923 | - | C1H2g21155 | CX2g022542 | LOC_Os02g44642 | Os02g0666300 | - | Detail |
| C2H2g12993 | 2:25,110,391-25,111,992 | - | C1H2g00956 | CX2g024363 | LOC_Os02g44654 | Os02g0666500 | - | Detail |
| C2H2g27502 | 2:25,120,174-25,120,767 | + | C1H2g19891 | CX2g022367 | LOC_Os02g44670 | Os02g0666600 | - | Detail |
| C2H2g03248 | 2:25,124,128-25,125,744 | + | C1H2g08536 | CX2g022228 | LOC_Os02g44680 | Os02g0666700 | - | Detail |
| C2H2g29413 | 2:25,126,338-25,129,370 | - | C1H2g05077 | CX2g023682 | LOC_Os02g44690 | Os02g0666800 | - | Detail |
| C2H2g02780 | 2:25,129,747-25,130,205 | + | C1H2g19472 | CX2g022801 | LOC_Os02g44700 | Os02g0666900 | - | Detail |
| C2H2g10469 | 2:25,131,494-25,131,835 | - | C1H2g08289 | CX2g021659 | LOC_Os02g44704 | Os02g0667000 | - | Detail |
| C2H2g30601 | 2:25,133,904-25,134,292 | - | - | CX2g020096 | - | Os02g0667050 | - | Detail |
| C2H2g03161 | 2:25,143,961-25,144,389 | - | - | CX2g022701 | LOC_Os02g44710 | Os02g0667100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |