| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g24567 | 3:5,522,815-5,525,635 | + | C2H3g18755 | CX3g029021 | LOC_Os03g11760 | Os03g0216800 | - | Detail |
| C1H3g18611 | 3:5,529,479-5,534,259 | + | C2H3g21216 | CX3g025795 | LOC_Os03g11770 | Os03g0216900 | - | Detail |
| C1H3g15471 | 3:5,534,782-5,535,195 | - | C2H3g13077 | CX3g025145 | LOC_Os03g11780 | Os03g0217000 | - | Detail |
| C1H3g22547 | 3:5,538,443-5,541,767 | + | C2H3g01791 | CX3g026323 | LOC_Os03g11790 | Os03g0217200 | - | Detail |
| C1H3g25970 | 3:5,546,441-5,552,323 | + | C2H3g17874 | CX3g026533 | LOC_Os03g11890 | Os03g0218300 | - | Detail |
| C1H3g04450 | 3:5,552,712-5,556,996 | - | C2H3g10730 | CX3g031320 | LOC_Os03g11900 | Os03g0218400 | OsMST4 | Detail |
| C1H3g10632 | 3:5,562,561-5,565,745 | - | C2H3g22152 | CX3g030309 | LOC_Os03g11910 | Os03g0218500 | - | Detail |
| C1H3g06308 | 3:5,581,833-5,584,574 | + | C2H3g13924 | CX3g025032 | LOC_Os03g11950 | Os03g0219100 | OsSec14-26 | Detail |
| C1H3g24825 | 3:5,588,094-5,590,828 | - | C2H3g24481 | CX3g027163 | LOC_Os03g11960 | Os03g0219200 | OsCSD3 | Detail |
| C1H3g11590 | 3:5,591,311-5,595,077 | - | C2H3g03285 | CX3g028374 | LOC_Os03g11970 | Os03g0219300 | - | Detail |
| C1H3g20877 | 3:5,595,939-5,598,537 | - | C2H3g25818 | CX3g028318 | LOC_Os03g11980 | Os03g0219400 | - | Detail |
| C1H3g14036 | 3:5,599,980-5,601,479 | + | C2H3g26156 | CX3g029685 | LOC_Os03g11990 | Os03g0219500 | - | Detail |
| C1H3g26472 | 3:5,603,730-5,607,431 | - | C2H3g18310 | CX3g028368 | LOC_Os03g12000 | Os03g0219700 | - | Detail |
| C1H3g15777 | 3:5,608,891-5,613,075 | + | C2H3g00756 | CX3g026437 | LOC_Os03g12010 | Os03g0219800 | - | Detail |
| C1H3g13535 | 3:5,613,615-5,615,733 | + | C2H3g05450 | CX3g028610 | LOC_Os03g12020 | Os03g0219900 | - | Detail |
| C1H3g10915 | 3:5,621,207-5,623,354 | - | C2H3g23972 | CX3g026270 | LOC_Os03g12030 | Os03g0220100 | WSL4, CER6/CUT1, CER6, CUT1, OsCER6 | Detail |
| C1H3g01618 | 3:5,643,998-5,646,450 | + | C2H3g23561 | CX3g025137 | LOC_Os03g12110 | Os03g0221200 | - | Detail |
| C1H3g06610 | 3:5,647,019-5,654,607 | - | C2H3g25327 | CX3g025281 | LOC_Os03g12120 | Os03g0221300 | - | Detail |
| C1H3g09947 | 3:5,657,529-5,661,726 | + | C2H3g25299 | CX3g028100 | LOC_Os03g12140 | Os03g0221500 | - | Detail |
| C1H3g29297 | 3:5,664,798-5,667,335 | + | C2H3g19033 | CX3g026372 | LOC_Os03g12150 | Os03g0221700 | SDRLK-9 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g20665 | 9:14,934,613-14,935,428 | + | C1H9g09920 | CX9g054935 | LOC_Os09g29390 | Os09g0469300 | - | Detail |
| C2H9g09508 | 9:14,948,886-14,958,792 | - | C1H9g12400 | CX9g057633 | LOC_Os09g29404 | Os09g0469400 | OsISA3 | Detail |
| C2H9g21514 | 9:14,966,891-14,972,566 | + | C1H9g02401 | CX9g056343 | LOC_Os09g29420 | Os09g0469900 | - | Detail |
| C2H9g15645 | 9:14,974,234-14,978,130 | + | C1H9g07158 | CX9g056572 | LOC_Os09g29430 | Os09g0470000 | - | Detail |
| C2H9g00352 | 9:14,991,547-14,992,611 | + | C1H9g24171 | CX9g057773 | LOC_Os09g29460 | Os09g0470500 | Oshox4 | Detail |
| C2H9g02701 | 9:15,012,063-15,017,633 | + | C1H9g12977 | CX9g057955 | LOC_Os09g29470 | Os09g0470900 | - | Detail |
| C2H9g14076 | 9:15,023,069-15,024,853 | + | C1H9g10138 | CX9g057569 | LOC_Os09g29480 | Os09g0471000 | - | Detail |
| C2H9g19233 | 9:15,026,064-15,029,153 | - | C1H9g26480 | CX9g057583 | LOC_Os09g29490 | Os09g0471100 | - | Detail |
| C2H9g15334 | 9:15,039,605-15,044,010 | - | C1H9g07160 | CX9g055547 | LOC_Os09g29510 | Os09g0471200 | - | Detail |
| C2H9g13479 | 9:15,051,205-15,056,900 | - | C1H9g21291 | CX9g055547 | LOC_Os09g29520 | Os09g0471400 | - | Detail |
| C2H9g01991 | 9:15,058,993-15,060,869 | - | C1H9g15036 | CX9g055547 | LOC_Os09g29540 | Os09g0471400 | - | Detail |
| C2H9g19004 | 9:15,064,679-15,065,404 | - | C1H9g29416 | CX9g055547 | LOC_Os09g29560 | Os09g0471550 | - | Detail |
| C2H9g22809 | 9:15,068,975-15,076,835 | - | C1H9g15036 | CX9g056722 | LOC_Os09g30454 | Os09g0482640 | - | Detail |
| C2H9g01704 | 9:15,077,119-15,077,844 | - | C1H9g29416 | CX9g055547 | LOC_Os09g29560 | Os09g0471550 | - | Detail |
| C2H9g01431 | 9:15,085,788-15,090,143 | - | C1H9g21291 | CX9g055547 | LOC_Os09g29600 | Os09g0471800 | OsWAK85 | Detail |
| C2H9g14620 | 9:15,092,094-15,093,280 | - | C1H9g24909 | CX9g055547 | LOC_Os09g29600 | Os09g0471500 | - | Detail |
| C2H9g07478 | 9:15,099,099-15,106,780 | + | C1H9g20642 | CX9g055969 | LOC_Os09g29630 | Os09g0471900 | - | Detail |
| C2H9g29453 | 9:15,128,609-15,133,358 | + | C1H9g08939 | CX9g057043 | LOC_Os09g29660 | Os09g0472100 | - | Detail |
| C2H9g26402 | 9:15,139,169-15,144,999 | + | C1H9g25191 | CX9g056707 | LOC_Os09g29670 | Os09g0472200 | - | Detail |
| C2H9g29601 | 9:15,147,598-15,148,261 | + | C1H9g02840 | CX9g055667 | LOC_Os09g29690 | Os09g0472700 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |