| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g17331 | 3:5,338,578-5,345,195 | + | C2H3g17746 | CX3g028416 | LOC_Os03g11520 | Os03g0213900 | - | Detail |
| C1H3g12951 | 3:5,345,585-5,351,080 | + | C2H3g08543 | CX3g030880 | LOC_Os03g11530 | Os03g0214000 | - | Detail |
| C1H3g14932 | 3:5,352,075-5,355,579 | + | C2H3g18859 | CX3g028514 | LOC_Os03g11540 | Os03g0214100 | OsRPA70b | Detail |
| C1H3g10644 | 3:5,356,021-5,361,678 | - | C2H3g25555 | CX3g029924 | LOC_Os03g11550 | Os03g0214200 | - | Detail |
| C1H3g04750 | 3:5,366,054-5,369,454 | - | C2H3g22606 | CX3g027534 | LOC_Os03g11560 | Os03g0214400 | - | Detail |
| C1H3g15538 | 3:5,371,578-5,375,503 | + | C2H3g22039 | CX3g027043 | LOC_Os03g11570 | Os03g0214600 | - | Detail |
| C1H3g09681 | 3:5,378,035-5,382,962 | - | C2H3g03744 | - | - | - | - | Detail |
| C1H3g00304 | 3:5,384,562-5,388,404 | - | C2H3g29664 | CX3g025722 | LOC_Os03g11590 | Os03g0215000 | - | Detail |
| C1H3g11825 | 3:5,415,400-5,421,453 | + | C2H3g24849 | CX3g029987 | LOC_Os03g11600 | Os03g0215200 | DL, dl(lop), lop, dl, dl1 | Detail |
| C1H3g00757 | 3:5,427,325-5,429,696 | - | C2H3g11270 | CX3g026708 | LOC_Os03g11614 | Os03g0215400 | LHS1, OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO | Detail |
| C1H3g04456 | 3:5,435,446-5,435,640 | - | C2H3g18287 | CX3g026708 | LOC_Os03g11614 | Os03g0215400 | LHS1, OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO | Detail |
| C1H3g30377 | 3:5,454,338-5,459,662 | + | C2H3g25916 | CX3g026583 | LOC_Os03g11650 | Os03g0215700 | - | Detail |
| C1H3g02997 | 3:5,460,442-5,463,830 | + | C2H3g12512 | CX3g026851 | LOC_Os03g11660 | Os03g0215800 | - | Detail |
| C1H3g12813 | 3:5,464,321-5,466,351 | - | C2H3g19342 | CX3g025630 | LOC_Os03g11670 | Os03g0215900 | OsPPR676, OsATP4 | Detail |
| C1H3g00186 | 3:5,474,194-5,475,087 | - | C2H3g13701 | CX3g030485 | LOC_Os03g11680 | Os03g0216000 | - | Detail |
| C1H3g15045 | 3:5,488,251-5,490,104 | + | C2H3g30038 | CX3g027591 | LOC_Os03g11690 | Os03g0216300 | - | Detail |
| C1H3g15740 | 3:5,491,793-5,492,971 | - | C2H3g05049 | CX3g029865 | LOC_Os03g11700 | Os03g0216400 | - | Detail |
| C1H3g17461 | 3:5,494,130-5,495,182 | - | C2H3g19799 | CX3g030660 | LOC_Os03g11710 | Os03g0216500 | - | Detail |
| C1H3g21782 | 3:5,501,406-5,505,435 | + | C2H3g02073 | CX3g030548 | LOC_Os03g11720 | Os03g0216600 | - | Detail |
| C1H3g16227 | 3:5,506,130-5,517,012 | - | C2H3g12443 | CX3g029221 | LOC_Os03g11734 | Os03g0216700 | OsFRDL1 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g02060 | 3:485,335-491,499 | - | C1H3g02926 | CX3g026446 | LOC_Os03g02030 | Os03g0111100 | - | Detail |
| C2H3g10416 | 3:492,780-495,271 | - | C1H3g26294 | CX3g031029 | LOC_Os03g02040 | Os03g0111200 | - | Detail |
| C2H3g28715 | 3:498,296-498,589 | - | C1H3g15608 | CX3g030230 | LOC_Os03g02050 | Os03g0111300 | - | Detail |
| C2H3g08607 | 3:504,319-505,372 | - | C1H3g30842 | CX3g026627 | LOC_Os03g02070 | Os03g0111400 | - | Detail |
| C2H3g00134 | 3:508,909-517,722 | + | C1H3g29372 | CX3g029050 | LOC_Os03g02100 | Os03g0694900 | - | Detail |
| C2H3g12317 | 3:518,627-525,581 | + | C1H3g12244 | CX3g028048 | LOC_Os03g02110 | Os03g0111800 | - | Detail |
| C2H3g29148 | 3:528,162-538,899 | + | C1H3g07282 | CX3g026996 | LOC_Os03g02150 | Os03g0112101 | - | Detail |
| C2H3g00838 | 3:541,524-550,028 | + | C1H3g30522 | CX3g029929 | LOC_Os03g02160 | Os03g0112700 | EHD4, OsC3H20, C3H20, Ehd4 | Detail |
| C2H3g27881 | 3:550,776-555,023 | - | C1H3g07238 | CX3g030050 | LOC_Os03g02170 | Os03g0112800 | STS1 | Detail |
| C2H3g26177 | 3:555,421-557,266 | - | C1H3g09620 | CX3g030634 | LOC_Os03g02180 | Os03g0112900 | OsF5HL2 | Detail |
| C2H3g13014 | 3:562,004-563,679 | - | C1H3g14295 | CX3g025559 | LOC_Os03g02190 | Os03g0113000 | - | Detail |
| C2H3g22975 | 3:566,114-569,005 | + | C1H3g06676 | CX3g028290 | LOC_Os03g02200 | Os03g0113100 | - | Detail |
| C2H3g07317 | 3:570,078-572,543 | + | C1H3g29988 | CX3g026697 | LOC_Os03g02210 | Os03g0113200 | - | Detail |
| C2H3g26703 | 3:581,466-585,763 | - | C1H3g08654 | CX3g028541 | LOC_Os03g02240 | - | - | Detail |
| C2H3g21122 | 3:596,680-601,118 | - | C1H3g00977 | CX3g027292 | LOC_Os03g02260 | Os03g0113700 | - | Detail |
| C2H3g16661 | 3:601,432-606,865 | + | C1H3g24927 | CX3g030810 | LOC_Os03g02270 | Os03g0113800 | - | Detail |
| C2H3g07262 | 3:612,061-612,657 | + | C1H3g15339 | CX3g028218 | LOC_Os03g02280 | Os03g0113900 | OsS40-4 | Detail |
| C2H3g09613 | 3:616,392-622,786 | + | C1H3g18554 | CX3g027517 | LOC_Os03g02290 | Os03g0114000 | - | Detail |
| C2H3g23619 | 3:623,865-624,590 | + | C1H3g18461 | CX3g025737 | LOC_Os03g02300 | Os03g0114100 | - | Detail |
| C2H3g25616 | 3:625,873-627,438 | - | C1H3g30974 | CX3g030259 | LOC_Os03g02310 | Os03g0114200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |