| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g23847 | 3:5,074,164-5,076,920 | + | C2H3g02775 | CX3g030551 | LOC_Os03g11040 | Os03g0208800 | - | Detail |
| C1H3g19795 | 3:5,077,599-5,082,271 | - | C2H3g21926 | CX3g025131 | LOC_Os03g11050 | Os03g0208900 | - | Detail |
| C1H3g29509 | 3:5,083,675-5,084,148 | + | C2H3g02600 | CX3g026202 | LOC_Os03g11060 | Os03g0209000 | - | Detail |
| C1H3g10782 | 3:5,093,738-5,095,149 | + | C2H3g29617 | CX3g026445 | LOC_Os03g11100 | Os03g0209400 | GOT1B, GLUP2/GOT1B, GPA4 | Detail |
| C1H3g28553 | 3:5,095,752-5,100,489 | - | C2H3g20518 | CX3g027814 | LOC_Os03g11110 | Os03g0209500 | - | Detail |
| C1H3g28595 | 3:5,104,579-5,112,065 | + | C2H3g02047 | CX3g027707 | LOC_Os03g11120 | Os03g0209600 | - | Detail |
| C1H3g28031 | 3:5,112,641-5,115,756 | + | C2H3g27933 | CX3g029679 | LOC_Os03g15190 | Os03g0209700 | - | Detail |
| C1H3g31436 | 3:5,118,643-5,128,768 | + | C2H3g21412 | CX3g026421 | LOC_Os03g11140 | Os03g0209800 | - | Detail |
| C1H3g26339 | 3:5,133,030-5,133,368 | - | C2H3g16472 | CX3g027593 | LOC_Os03g11160 | Os03g0210000 | - | Detail |
| C1H3g24055 | 3:5,135,527-5,135,880 | - | C2H3g27277 | CX3g025375 | LOC_Os03g11170 | Os03g0210100 | - | Detail |
| C1H3g27613 | 3:5,138,280-5,138,636 | - | C2H3g18125 | CX3g028377 | LOC_Os03g11180 | Os03g0210200 | - | Detail |
| C1H3g13004 | 3:5,142,266-5,149,103 | - | C2H3g21913 | CX3g029308 | LOC_Os03g11200 | Os03g0210400 | - | Detail |
| C1H3g15282 | 3:5,152,250-5,154,481 | + | C2H3g25075 | CX3g030415 | LOC_Os03g11210 | Os03g0210500 | - | Detail |
| C1H3g18916 | 3:5,157,253-5,158,398 | - | C2H3g24832 | CX3g031148 | LOC_Os03g11220 | Os03g0210600 | - | Detail |
| C1H3g29587 | 3:5,159,200-5,160,188 | + | C2H3g17169 | CX3g025909 | LOC_Os03g11230 | Os03g0210700 | - | Detail |
| C1H3g28959 | 3:5,160,757-5,170,367 | - | C2H3g29083 | CX3g029919 | LOC_Os03g11240 | Os03g0210800 | - | Detail |
| C1H3g06712 | 3:5,174,708-5,175,186 | + | C2H3g10848 | CX3g028792 | LOC_Os03g11250 | Os03g0210900 | - | Detail |
| C1H3g11024 | 3:5,178,358-5,180,068 | + | C2H3g14713 | CX3g028627 | LOC_Os03g11260 | Os03g0211100 | - | Detail |
| C1H3g11102 | 3:5,189,026-5,194,028 | + | - | - | - | - | - | Detail |
| C1H3g14759 | 3:5,194,532-5,196,764 | - | C2H3g19439 | CX3g028056 | LOC_Os03g11300 | Os03g0211500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g08716 | 3:16,925,345-16,925,834 | + | C1H3g16844 | - | LOC_Os03g32330 | Os03g0438400 | - | Detail |
| C2H3g25901 | 3:16,975,364-16,976,902 | + | C1H3g27126 | CX3g028421 | LOC_Os03g32470 | Os03g0439500 | - | Detail |
| C2H3g00828 | 3:16,982,325-16,983,125 | - | C1H3g10649 | CX3g029614 | - | Os03g0114400 | - | Detail |
| C2H3g13437 | 3:17,025,684-17,027,541 | - | C1H3g06834 | CX3g025406 | LOC_Os03g32490 | Os03g0439700 | - | Detail |
| C2H3g15363 | 3:17,032,739-17,034,277 | + | C1H3g21761 | CX3g028175 | LOC_Os03g32499 | Os03g0439800 | - | Detail |
| C2H3g25565 | 3:17,052,831-17,055,209 | + | C1H3g11595 | CX3g026641 | LOC_Os03g32580 | Os03g0440900 | - | Detail |
| C2H3g20190 | 3:17,055,536-17,064,832 | - | C1H3g28711 | CX3g027696 | LOC_Os03g32590 | Os03g0441000 | - | Detail |
| C2H3g11825 | 3:17,074,561-17,077,071 | - | C1H3g12283 | CX3g025857 | LOC_Os03g32620 | Os03g0441400 | - | Detail |
| C2H3g07036 | 3:17,168,713-17,169,390 | + | C1H3g09033 | CX3g025420 | LOC_Os03g32790 | Os03g0442900 | - | Detail |
| C2H3g18530 | 3:17,316,196-17,316,901 | - | C1H3g08585 | CX3g029665 | LOC_Os03g33090 | Os03g0445700 | OsLBD37 | Detail |
| C2H3g30048 | 3:17,359,090-17,362,124 | + | C1H3g15486 | CX3g024950 | - | - | - | Detail |
| C2H3g30096 | 3:17,427,330-17,434,816 | - | C1H3g26264 | CX3g029845 | LOC_Os03g33580 | Os03g0448600 | - | Detail |
| C2H3g02896 | 3:17,446,012-17,452,485 | - | C1H3g27459 | CX3g025874 | LOC_Os03g33590 | Os03g0448700 | - | Detail |
| C2H3g09597 | 3:17,504,409-17,508,494 | + | C1H3g11876 | CX3g025469 | LOC_Os03g33650 | Os03g0449200 | SHL4, SHO2, SHO2/SHL4, OsAGO7 | Detail |
| C2H3g06387 | 3:17,573,773-17,577,321 | - | C1H3g10349 | CX3g028866 | LOC_Os03g33012 | Os03g0444900 | OsWRKY33, OsWRKY81 | Detail |
| C2H3g24450 | 3:17,583,817-17,584,173 | - | C1H3g26549 | - | - | Os03g0444900 | OsWRKY33, OsWRKY81 | Detail |
| C2H3g04259 | 3:17,695,517-17,699,643 | - | C1H3g16808 | CX3g031079 | LOC_Os03g34040 | Os03g0452300 | - | Detail |
| C2H3g26683 | 3:17,735,716-17,736,909 | + | - | CX3g027872 | - | Os03g0454300 | - | Detail |
| C2H3g20904 | 3:17,751,779-17,752,998 | + | C1H3g08800 | CX3g026859 | LOC_Os03g34280 | Os03g0453800 | - | Detail |
| C2H3g06895 | 3:17,755,871-17,758,744 | + | C1H3g13672 | CX3g026131 | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |