| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g09266 | 3:4,904,852-4,911,840 | + | C2H3g01278 | CX3g028760 | LOC_Os03g10780 | Os03g0205400 | - | Detail |
| C1H3g14529 | 3:4,913,544-4,918,530 | + | C2H3g28949 | CX3g029451 | LOC_Os03g10790 | Os03g0205500 | - | Detail |
| C1H3g24511 | 3:4,926,401-4,931,763 | + | C2H3g29987 | CX3g026705 | LOC_Os03g10800 | Os03g0205700 | - | Detail |
| C1H3g03568 | 3:4,936,763-4,938,229 | - | C2H3g05398 | CX3g029670 | LOC_Os03g10810 | Os03g0205800 | HHC3 | Detail |
| C1H3g13621 | 3:4,944,752-4,960,655 | - | C2H3g12127 | CX3g029010 | LOC_Os03g10820 | Os03g0762900 | - | Detail |
| C1H3g08320 | 3:4,965,861-4,966,886 | - | C2H3g24955 | CX3g025706 | - | Os03g0206201 | - | Detail |
| C1H3g31074 | 3:4,967,476-4,970,809 | - | - | - | - | - | - | Detail |
| C1H3g09000 | 3:4,977,714-4,978,093 | - | C2H3g09566 | CX3g025152 | LOC_Os03g10860 | Os03g0206400 | - | Detail |
| C1H3g23004 | 3:4,983,859-4,986,330 | + | C2H3g30671 | CX3g025216 | LOC_Os03g10870 | Os03g0206600 | - | Detail |
| C1H3g06410 | 3:4,987,578-4,990,347 | - | C2H3g08057 | CX3g028250 | LOC_Os03g10880 | Os03g0206700 | - | Detail |
| C1H3g27718 | 3:4,991,983-4,994,469 | + | C2H3g20915 | CX3g028910 | LOC_Os03g10890 | Os03g0206900 | - | Detail |
| C1H3g00893 | 3:5,011,803-5,014,766 | - | C2H3g10611 | CX3g026802 | LOC_Os03g10920 | Os03g0207200 | - | Detail |
| C1H3g01133 | 3:5,015,624-5,017,577 | - | C2H3g21091 | CX3g025332 | LOC_Os03g10930 | Os03g0207250 | - | Detail |
| C1H3g28849 | 3:5,018,053-5,022,776 | - | C2H3g16402 | CX3g026481 | LOC_Os03g10940 | Os03g0207300 | - | Detail |
| C1H3g06136 | 3:5,031,090-5,032,849 | + | C2H3g22551 | CX3g026300 | LOC_Os03g10950 | Os03g0207400 | - | Detail |
| C1H3g30385 | 3:5,036,888-5,039,139 | + | C2H3g27737 | CX3g028734 | LOC_Os03g10980 | Os03g0207800 | - | Detail |
| C1H3g09911 | 3:5,041,620-5,045,541 | - | C2H3g03380 | CX3g029045 | LOC_Os03g10990 | Os03g0207900 | - | Detail |
| C1H3g06609 | 3:5,046,661-5,050,805 | - | C2H3g00163 | CX3g026306 | LOC_Os03g11010 | Os03g0208500 | NRAMP2, OsNramp2, OsNRAMP2 | Detail |
| C1H3g30012 | 3:5,065,565-5,067,157 | + | C2H3g10069 | CX3g026296 | LOC_Os03g11020 | Os03g0208600 | - | Detail |
| C1H3g13525 | 3:5,069,353-5,072,403 | + | C2H3g05594 | CX3g026122 | LOC_Os03g11030 | Os03g0208700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g21548 | 2:656,562-659,068 | - | C1H2g11762 | CX2g024182 | LOC_Os02g02340 | Os02g0114400 | - | Detail |
| C2H2g04111 | 2:661,799-662,994 | - | C1H2g29199 | CX2g021876 | LOC_Os02g02350 | Os02g0114600 | - | Detail |
| C2H2g07298 | 2:666,198-669,177 | + | C1H2g10090 | CX2g021156 | LOC_Os02g02360 | Os02g0114700 | - | Detail |
| C2H2g02552 | 2:669,813-671,273 | - | C1H2g19065 | CX2g020281 | LOC_Os02g02370 | Os02g0114800 | Os2R_MYB21 | Detail |
| C2H2g18097 | 2:687,514-688,196 | - | C1H2g14513 | CX2g022130 | - | - | - | Detail |
| C2H2g11269 | 2:689,622-695,166 | + | C1H2g31636 | CX2g023614 | LOC_Os02g02390 | Os02g0115600 | - | Detail |
| C2H2g21905 | 2:695,680-698,536 | - | C1H2g15167 | CX2g022215 | LOC_Os02g02400 | Os02g0115700 | - | Detail |
| C2H2g22925 | 2:707,960-711,879 | - | C1H2g18712 | CX2g022763 | LOC_Os02g02410 | Os02g0115900 | - | Detail |
| C2H2g22481 | 2:720,215-726,027 | - | C1H2g23488 | CX2g018904 | LOC_Os02g02424 | Os02g0116100 | - | Detail |
| C2H2g02693 | 2:726,185-731,100 | + | C1H2g08310 | CX2g024684 | LOC_Os02g02450 | Os02g0116300 | - | Detail |
| C2H2g25370 | 2:732,401-735,107 | - | C1H2g18413 | CX2g022303 | LOC_Os02g02460 | Os02g0116400 | - | Detail |
| C2H2g02725 | 2:736,715-740,195 | + | C1H2g02239 | CX2g023722 | LOC_Os02g02470 | Os02g0116500 | - | Detail |
| C2H2g29037 | 2:741,032-743,102 | - | C1H2g18401 | CX2g022400 | LOC_Os02g02480 | Os02g0116600 | - | Detail |
| C2H2g04369 | 2:757,985-760,534 | - | C1H2g23190 | - | - | Os02g0116750 | - | Detail |
| C2H2g22344 | 2:763,600-767,567 | + | C1H2g26296 | CX2g022188 | LOC_Os02g02500 | Os02g0116800 | - | Detail |
| C2H2g30237 | 2:768,469-769,100 | - | C1H2g25904 | CX2g022274 | LOC_Os02g02510 | Os02g0116900 | - | Detail |
| C2H2g06807 | 2:769,474-773,615 | + | C1H2g09113 | CX2g020897 | LOC_Os02g02520 | Os02g0117100 | - | Detail |
| C2H2g05457 | 2:774,800-777,841 | + | C1H2g08549 | CX2g019978 | LOC_Os02g02524 | Os02g0117200 | - | Detail |
| C2H2g17690 | 2:778,963-783,783 | + | C1H2g08561 | CX2g019978 | LOC_Os02g02530 | Os02g0117400 | - | Detail |
| C2H2g19794 | 2:790,932-796,120 | + | C1H2g26952 | CX2g018844 | LOC_Os02g02540 | Os02g0117500 | OsGLR3.2 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |