| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g09266 | 3:4,904,852-4,911,840 | + | C2H3g01278 | CX3g028760 | LOC_Os03g10780 | Os03g0205400 | - | Detail |
| C1H3g14529 | 3:4,913,544-4,918,530 | + | C2H3g28949 | CX3g029451 | LOC_Os03g10790 | Os03g0205500 | - | Detail |
| C1H3g24511 | 3:4,926,401-4,931,763 | + | C2H3g29987 | CX3g026705 | LOC_Os03g10800 | Os03g0205700 | - | Detail |
| C1H3g03568 | 3:4,936,763-4,938,229 | - | C2H3g05398 | CX3g029670 | LOC_Os03g10810 | Os03g0205800 | HHC3 | Detail |
| C1H3g13621 | 3:4,944,752-4,960,655 | - | C2H3g12127 | CX3g029010 | LOC_Os03g10820 | Os03g0762900 | - | Detail |
| C1H3g08320 | 3:4,965,861-4,966,886 | - | C2H3g24955 | CX3g025706 | - | Os03g0206201 | - | Detail |
| C1H3g31074 | 3:4,967,476-4,970,809 | - | - | - | - | - | - | Detail |
| C1H3g09000 | 3:4,977,714-4,978,093 | - | C2H3g09566 | CX3g025152 | LOC_Os03g10860 | Os03g0206400 | - | Detail |
| C1H3g23004 | 3:4,983,859-4,986,330 | + | C2H3g30671 | CX3g025216 | LOC_Os03g10870 | Os03g0206600 | - | Detail |
| C1H3g06410 | 3:4,987,578-4,990,347 | - | C2H3g08057 | CX3g028250 | LOC_Os03g10880 | Os03g0206700 | - | Detail |
| C1H3g27718 | 3:4,991,983-4,994,469 | + | C2H3g20915 | CX3g028910 | LOC_Os03g10890 | Os03g0206900 | - | Detail |
| C1H3g00893 | 3:5,011,803-5,014,766 | - | C2H3g10611 | CX3g026802 | LOC_Os03g10920 | Os03g0207200 | - | Detail |
| C1H3g01133 | 3:5,015,624-5,017,577 | - | C2H3g21091 | CX3g025332 | LOC_Os03g10930 | Os03g0207250 | - | Detail |
| C1H3g28849 | 3:5,018,053-5,022,776 | - | C2H3g16402 | CX3g026481 | LOC_Os03g10940 | Os03g0207300 | - | Detail |
| C1H3g06136 | 3:5,031,090-5,032,849 | + | C2H3g22551 | CX3g026300 | LOC_Os03g10950 | Os03g0207400 | - | Detail |
| C1H3g30385 | 3:5,036,888-5,039,139 | + | C2H3g27737 | CX3g028734 | LOC_Os03g10980 | Os03g0207800 | - | Detail |
| C1H3g09911 | 3:5,041,620-5,045,541 | - | C2H3g03380 | CX3g029045 | LOC_Os03g10990 | Os03g0207900 | - | Detail |
| C1H3g06609 | 3:5,046,661-5,050,805 | - | C2H3g00163 | CX3g026306 | LOC_Os03g11010 | Os03g0208500 | NRAMP2, OsNramp2, OsNRAMP2 | Detail |
| C1H3g30012 | 3:5,065,565-5,067,157 | + | C2H3g10069 | CX3g026296 | LOC_Os03g11020 | Os03g0208600 | - | Detail |
| C1H3g13525 | 3:5,069,353-5,072,403 | + | C2H3g05594 | CX3g026122 | LOC_Os03g11030 | Os03g0208700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g26843 | 1:4,750,245-4,750,844 | - | C1H1g07163 | CX1g002407 | LOC_Os01g10260 | Os01g0199700 | - | Detail |
| C2H1g15755 | 1:4,753,246-4,753,757 | + | - | - | - | - | - | Detail |
| C2H1g21983 | 1:4,754,465-4,761,263 | + | C1H1g01459 | CX1g001007 | LOC_Os01g10280 | Os01g0199900 | - | Detail |
| C2H1g12530 | 1:4,759,885-4,760,309 | - | - | - | - | Os01g0199950 | - | Detail |
| C2H1g11537 | 1:4,762,509-4,765,113 | - | C1H1g26995 | CX1g006987 | LOC_Os01g10290 | Os01g0200000 | - | Detail |
| C2H1g01403 | 1:4,764,199-4,764,535 | + | - | - | - | Os01g0200150 | - | Detail |
| C2H1g00798 | 1:4,767,188-4,768,654 | + | C1H1g02233 | CX1g001007 | LOC_Os01g10280 | Os01g0199900 | - | Detail |
| C2H1g29755 | 1:4,771,673-4,771,900 | + | C1H1g09040 | - | - | - | - | Detail |
| C2H1g04474 | 1:4,775,772-4,776,284 | + | C1H1g04241 | CX1g003266 | LOC_Os01g10310 | Os01g0200200 | - | Detail |
| C2H1g05458 | 1:4,778,185-4,778,632 | - | C1H10g24741 | CX1g004349 | - | - | - | Detail |
| C2H1g25742 | 1:4,780,038-4,785,038 | - | C1H1g07309 | CX1g001960 | LOC_Os01g10320 | Os01g0200300 | OsHB5 | Detail |
| C2H1g13754 | 1:4,788,897-4,795,712 | - | C1H1g18253 | CX1g004279 | LOC_Os01g10340 | Os01g0200400 | - | Detail |
| C2H1g05709 | 1:4,795,975-4,799,864 | + | C1H1g19440 | CX1g005266 | LOC_Os01g10350 | Os01g0200500 | - | Detail |
| C2H1g21530 | 1:4,806,648-4,807,112 | - | C1H1g08742 | CX1g001261 | LOC_Os01g10370 | Os01g0200600 | - | Detail |
| C2H1g04740 | 1:4,807,137-4,807,349 | - | C1H1g28709 | CX1g001261 | LOC_Os01g10370 | Os01g0200600 | - | Detail |
| C2H1g10402 | 1:4,816,249-4,817,100 | + | C1H1g04932 | - | LOC_Os01g10400 | Os01g0200700 | OsMT-3a | Detail |
| C2H1g28750 | 1:4,825,386-4,841,784 | + | C1H1g18217 | CX1g006358 | LOC_Os01g10440 | Os01g0201000 | - | Detail |
| C2H1g25446 | 1:4,843,430-4,847,372 | - | C1H1g30064 | CX1g000033 | LOC_Os01g10450 | Os01g0201200 | - | Detail |
| C2H1g26595 | 1:4,850,790-4,851,053 | - | - | CX1g006703 | - | - | - | Detail |
| C2H1g20579 | 1:4,863,450-4,864,085 | - | - | CX1g002489 | - | Os01g0201250 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |