| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g08866 | 3:4,746,841-4,749,557 | + | C2H3g27684 | CX3g025008 | LOC_Os03g10460 | Os03g0201700 | - | Detail |
| C1H3g26823 | 3:4,749,420-4,752,363 | - | C2H3g15317 | CX3g027908 | LOC_Os03g10469 | Os03g0201800 | - | Detail |
| C1H3g22443 | 3:4,753,242-4,757,638 | - | C2H3g07444 | CX3g027908 | LOC_Os03g10478 | Os03g0201901 | - | Detail |
| C1H3g14443 | 3:4,763,199-4,766,780 | - | C2H3g09161 | CX3g028036 | LOC_Os03g10500 | Os03g0202001 | - | Detail |
| C1H3g22113 | 3:4,769,015-4,772,493 | - | C2H3g24025 | CX3g026152 | LOC_Os03g10510 | Os03g0202200 | OsVDAC5 | Detail |
| C1H3g27837 | 3:4,773,524-4,777,490 | - | C2H3g13194 | CX3g030169 | LOC_Os03g10520 | Os03g0202300 | - | Detail |
| C1H3g27666 | 3:4,778,936-4,781,970 | - | C2H3g17561 | CX3g025689 | LOC_Os03g10590 | Os03g0203000 | - | Detail |
| C1H3g27625 | 3:4,785,357-4,791,941 | + | C2H3g21513 | CX3g029844 | LOC_Os03g10600 | Os03g0203100 | - | Detail |
| C1H3g03653 | 3:4,804,314-4,805,361 | + | C2H3g08169 | CX3g027943 | LOC_Os03g10620 | Os03g0203200 | D14, D88, D88/D14, qPPB3, HTD4 | Detail |
| C1H3g22146 | 3:4,815,496-4,822,429 | + | C2H3g27974 | CX3g027605 | LOC_Os03g10640 | Os03g0203700 | - | Detail |
| C1H3g29891 | 3:4,824,485-4,825,962 | - | C2H3g08201 | CX3g028482 | LOC_Os03g10650 | Os03g0203800 | - | Detail |
| C1H3g06442 | 3:4,845,357-4,849,712 | + | C2H3g30001 | CX3g026677 | LOC_Os03g10680 | Os03g0204100 | - | Detail |
| C1H3g30369 | 3:4,853,202-4,854,391 | + | C2H3g23547 | CX3g029117 | LOC_Os03g10730 | - | - | Detail |
| C1H3g08546 | 3:4,861,677-4,862,096 | - | C2H3g15767 | - | LOC_Os03g10710 | Os03g0204500 | - | Detail |
| C1H3g00980 | 3:4,865,396-4,867,084 | + | C2H3g08384 | CX3g029117 | LOC_Os03g10730 | - | - | Detail |
| C1H3g16112 | 3:4,872,534-4,875,426 | + | C2H3g07827 | CX3g030767 | LOC_Os03g10730 | Os03g0157000 | - | Detail |
| C1H3g05329 | 3:4,876,244-4,876,674 | - | C2H3g15453 | - | LOC_Os03g10740 | Os03g0204900 | - | Detail |
| C1H3g13244 | 3:4,882,706-4,888,504 | - | C2H3g17885 | CX3g028803 | LOC_Os03g10750 | Os03g0205000 | SPL35 | Detail |
| C1H3g05069 | 3:4,891,051-4,892,879 | - | C2H3g11575 | - | LOC_Os03g10755 | Os03g0205150 | - | Detail |
| C1H3g10116 | 3:4,895,571-4,896,991 | - | C2H3g22270 | CX3g030429 | LOC_Os03g10770 | Os03g0205300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g14413 | 4:7,286,481-7,290,468 | + | C1H4g06358 | CX4g036444 | LOC_Os04g15580 | Os04g0366000 | - | Detail |
| C2H4g27049 | 4:7,321,484-7,322,545 | - | C1H4g14603 | CX4g035385 | LOC_Os04g14340 | Os04g0220501 | - | Detail |
| C2H4g23666 | 4:7,329,569-7,332,067 | + | C1H4g16815 | - | - | - | - | Detail |
| C2H4g03840 | 4:7,335,245-7,335,691 | - | C1H4g12802 | CX4g035733 | LOC_Os04g14360 | Os04g0221000 | - | Detail |
| C2H4g23137 | 4:7,354,616-7,362,154 | - | C1H4g14486 | CX4g035733 | LOC_Os04g14410 | Os04g0221000 | - | Detail |
| C2H4g04277 | 4:7,366,046-7,368,782 | + | C1H4g17568 | - | LOC_Os04g14420 | - | - | Detail |
| C2H4g14084 | 4:7,374,155-7,378,486 | - | C1H4g30087 | CX4g033365 | LOC_Os04g14450 | Os04g0221300 | - | Detail |
| C2H4g04483 | 4:7,378,887-7,379,116 | - | - | - | - | - | - | Detail |
| C2H4g15681 | 4:7,400,720-7,410,837 | - | C1H4g20191 | CX4g036219 | LOC_Os04g14510 | Os04g0221600 | - | Detail |
| C2H4g16880 | 4:7,446,530-7,447,250 | - | C1H4g25587 | CX4g036574 | LOC_Os04g13640 | Os04g0213800 | - | Detail |
| C2H4g16558 | 4:7,447,876-7,453,313 | - | C1H4g27190 | CX4g031595 | LOC_Os04g14570 | Os04g0213800 | - | Detail |
| C2H4g15426 | 4:7,487,110-7,503,524 | - | C1H4g09121 | CX4g033711 | LOC_Os04g14654 | Os04g0223000 | - | Detail |
| C2H4g19689 | 4:7,509,814-7,512,457 | - | C1H4g19080 | CX4g031538 | LOC_Os04g14680 | Os04g0223300 | - | Detail |
| C2H4g12058 | 4:7,514,300-7,520,504 | - | C1H4g25173 | CX4g031401 | LOC_Os04g14690 | Os04g0223500 | - | Detail |
| C2H4g10349 | 4:7,539,965-7,545,169 | - | C1H4g16118 | CX4g035150 | LOC_Os04g14690 | Os04g0223901 | - | Detail |
| C2H4g14405 | 4:7,543,736-7,544,182 | + | - | - | - | Os04g0224000 | - | Detail |
| C2H4g13050 | 4:7,552,178-7,555,311 | - | C1H4g31119 | CX4g032865 | LOC_Os11g41400 | - | - | Detail |
| C2H4g13102 | 4:7,571,830-7,574,721 | - | C1H4g31787 | - | - | - | - | Detail |
| C2H4g12943 | 4:7,580,866-7,585,679 | - | C1H4g10957 | CX4g031570 | LOC_Os04g14760 | Os04g0224600 | - | Detail |
| C2H4g19938 | 4:7,600,145-7,607,074 | - | C1H4g03285 | CX4g035046 | LOC_Os04g14790 | Os04g0224900 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |