| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g04729 | 3:4,611,926-4,613,460 | - | C2H3g24222 | CX3g030929 | LOC_Os03g10210 | Os03g0198600 | HOX12, Oshox12, OsHox12, GT1 | Detail |
| C1H3g24941 | 3:4,626,118-4,626,506 | + | C2H3g01513 | - | - | - | - | Detail |
| C1H3g23090 | 3:4,634,713-4,636,287 | - | C2H3g16295 | CX3g026889 | LOC_Os03g10220 | - | - | Detail |
| C1H3g13438 | 3:4,637,520-4,640,553 | - | C2H3g19804 | CX3g026154 | LOC_Os03g10224 | Os03g0198900 | - | Detail |
| C1H3g16749 | 3:4,640,745-4,645,102 | + | C2H3g09522 | CX3g028745 | LOC_Os03g10230 | Os03g0199000 | - | Detail |
| C1H3g12272 | 3:4,650,035-4,651,210 | + | C2H3g01585 | CX3g029096 | LOC_Os03g10240 | Os03g0199100 | - | Detail |
| C1H3g00274 | 3:4,660,923-4,662,003 | - | C2H3g23420 | CX3g031305 | LOC_Os03g10260 | Os03g0199500 | - | Detail |
| C1H3g07008 | 3:4,678,681-4,679,923 | + | C2H3g26891 | CX3g025392 | LOC_Os03g10300 | Os03g0200000 | - | Detail |
| C1H3g12286 | 3:4,687,802-4,689,563 | + | C2H3g01636 | CX3g029912 | LOC_Os03g10320 | Os03g0200200 | - | Detail |
| C1H3g29696 | 3:4,695,612-4,696,359 | + | C2H3g23926 | CX3g028962 | - | - | - | Detail |
| C1H3g13020 | 3:4,697,511-4,699,802 | + | C2H3g07176 | CX3g025427 | LOC_Os03g10340 | Os03g0200500 | - | Detail |
| C1H3g29298 | 3:4,699,933-4,704,069 | - | C2H3g17766 | CX3g027963 | LOC_Os03g10350 | Os03g0200600 | OsTPR075 | Detail |
| C1H3g01933 | 3:4,707,172-4,710,106 | - | C2H3g08890 | CX3g025362 | LOC_Os03g10360 | Os03g0200700 | - | Detail |
| C1H3g30301 | 3:4,711,278-4,713,578 | - | C2H3g09465 | CX3g031231 | LOC_Os03g10370 | Os03g0200800 | - | Detail |
| C1H3g28372 | 3:4,717,317-4,719,594 | + | C2H3g19650 | CX3g028366 | LOC_Os03g10390 | Os03g0201000 | - | Detail |
| C1H3g07769 | 3:4,719,979-4,724,128 | - | C2H3g21201 | CX3g026809 | LOC_Os03g10400 | Os03g0201100 | - | Detail |
| C1H3g03267 | 3:4,724,286-4,726,332 | + | C2H3g08749 | - | LOC_Os03g10410 | Os03g0201200 | - | Detail |
| C1H3g26783 | 3:4,726,856-4,729,237 | + | C2H3g27980 | CX3g027641 | LOC_Os03g10420 | Os03g0201400 | - | Detail |
| C1H3g14289 | 3:4,739,963-4,742,807 | + | C2H3g05108 | CX3g026129 | LOC_Os03g10440 | Os03g0201500 | OsMORE1a | Detail |
| C1H3g07517 | 3:4,743,790-4,746,012 | - | C2H3g04674 | CX3g029780 | LOC_Os03g10450 | Os03g0201600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g11002 | 5:4,491,773-4,493,353 | - | C1H5g11563 | CX5g036899 | LOC_Os05g09740 | Os05g0190300 | - | Detail |
| C2H5g24249 | 5:4,509,102-4,510,329 | - | C1H5g23723 | CX5g036921 | LOC_Os05g10210 | Os05g0190500 | - | Detail |
| C2H5g20639 | 5:4,535,732-4,538,162 | - | C1H5g00065 | CX5g036677 | LOC_Os05g10370 | Os05g0192100 | - | Detail |
| C2H5g13586 | 5:4,549,621-4,550,130 | - | C1H5g16697 | CX5g036691 | LOC_Os05g10420 | Os05g0192500 | - | Detail |
| C2H5g22558 | 5:4,552,860-4,553,354 | - | - | - | - | - | - | Detail |
| C2H5g13416 | 5:4,559,473-4,560,033 | - | C1H5g13749 | CX5g036691 | LOC_Os05g10480 | Os05g0193700 | - | Detail |
| C2H5g16635 | 5:4,579,476-4,580,343 | + | - | CX5g039478 | LOC_Os05g10570 | - | - | Detail |
| C2H5g18779 | 5:4,590,272-4,592,299 | - | C1H5g29574 | CX5g038928 | LOC_Os05g10580 | Os05g0193900 | - | Detail |
| C2H5g10531 | 5:4,596,153-4,597,814 | - | C1H5g29574 | CX5g038928 | LOC_Os05g10580 | Os05g0193900 | - | Detail |
| C2H5g29277 | 5:4,616,044-4,619,176 | - | C1H5g16419 | CX5g041003 | LOC_Os05g10620 | Os05g0194500 | - | Detail |
| C2H5g23614 | 5:4,622,529-4,626,914 | - | C1H5g00540 | CX5g038062 | LOC_Os05g10630 | Os05g0194600 | - | Detail |
| C2H5g28526 | 5:4,630,930-4,634,786 | + | - | CX5g037748 | LOC_Os05g10640 | - | - | Detail |
| C2H5g30195 | 5:4,656,440-4,658,600 | + | C1H5g29382 | CX5g036694 | LOC_Os05g10650 | Os05g0194900 | - | Detail |
| C2H5g18199 | 5:4,723,679-4,724,995 | - | C1H5g17361 | CX5g039790 | LOC_Os05g10690 | Os05g0195700 | - | Detail |
| C2H5g07854 | 5:4,750,821-4,759,663 | + | C1H5g16616 | CX5g040174 | LOC_Os05g10730 | Os05g0196100 | - | Detail |
| C2H5g20803 | 5:4,759,883-4,762,468 | - | C1H5g20504 | CX5g040771 | LOC_Os05g10740 | Os05g0196200 | - | Detail |
| C2H5g08170 | 5:4,780,126-4,787,020 | + | C1H5g08645 | CX5g039020 | LOC_Os05g10770 | Os05g0196500 | JMJ703 | Detail |
| C2H5g14684 | 5:4,795,497-4,797,265 | - | C1H5g01781 | CX5g038530 | LOC_Os05g10780 | Os05g0196600 | - | Detail |
| C2H5g26735 | 5:4,810,892-4,817,479 | + | C1H5g25112 | CX5g036775 | LOC_Os05g10810 | Os05g0196800 | OsDGAT1-1 | Detail |
| C2H5g21360 | 5:4,825,375-4,826,137 | + | C1H5g03382 | CX5g037768 | - | Os05g0197200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |