| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g04729 | 3:4,611,926-4,613,460 | - | C2H3g24222 | CX3g030929 | LOC_Os03g10210 | Os03g0198600 | HOX12, Oshox12, OsHox12, GT1 | Detail |
| C1H3g24941 | 3:4,626,118-4,626,506 | + | C2H3g01513 | - | - | - | - | Detail |
| C1H3g23090 | 3:4,634,713-4,636,287 | - | C2H3g16295 | CX3g026889 | LOC_Os03g10220 | - | - | Detail |
| C1H3g13438 | 3:4,637,520-4,640,553 | - | C2H3g19804 | CX3g026154 | LOC_Os03g10224 | Os03g0198900 | - | Detail |
| C1H3g16749 | 3:4,640,745-4,645,102 | + | C2H3g09522 | CX3g028745 | LOC_Os03g10230 | Os03g0199000 | - | Detail |
| C1H3g12272 | 3:4,650,035-4,651,210 | + | C2H3g01585 | CX3g029096 | LOC_Os03g10240 | Os03g0199100 | - | Detail |
| C1H3g00274 | 3:4,660,923-4,662,003 | - | C2H3g23420 | CX3g031305 | LOC_Os03g10260 | Os03g0199500 | - | Detail |
| C1H3g07008 | 3:4,678,681-4,679,923 | + | C2H3g26891 | CX3g025392 | LOC_Os03g10300 | Os03g0200000 | - | Detail |
| C1H3g12286 | 3:4,687,802-4,689,563 | + | C2H3g01636 | CX3g029912 | LOC_Os03g10320 | Os03g0200200 | - | Detail |
| C1H3g29696 | 3:4,695,612-4,696,359 | + | C2H3g23926 | CX3g028962 | - | - | - | Detail |
| C1H3g13020 | 3:4,697,511-4,699,802 | + | C2H3g07176 | CX3g025427 | LOC_Os03g10340 | Os03g0200500 | - | Detail |
| C1H3g29298 | 3:4,699,933-4,704,069 | - | C2H3g17766 | CX3g027963 | LOC_Os03g10350 | Os03g0200600 | OsTPR075 | Detail |
| C1H3g01933 | 3:4,707,172-4,710,106 | - | C2H3g08890 | CX3g025362 | LOC_Os03g10360 | Os03g0200700 | - | Detail |
| C1H3g30301 | 3:4,711,278-4,713,578 | - | C2H3g09465 | CX3g031231 | LOC_Os03g10370 | Os03g0200800 | - | Detail |
| C1H3g28372 | 3:4,717,317-4,719,594 | + | C2H3g19650 | CX3g028366 | LOC_Os03g10390 | Os03g0201000 | - | Detail |
| C1H3g07769 | 3:4,719,979-4,724,128 | - | C2H3g21201 | CX3g026809 | LOC_Os03g10400 | Os03g0201100 | - | Detail |
| C1H3g03267 | 3:4,724,286-4,726,332 | + | C2H3g08749 | - | LOC_Os03g10410 | Os03g0201200 | - | Detail |
| C1H3g26783 | 3:4,726,856-4,729,237 | + | C2H3g27980 | CX3g027641 | LOC_Os03g10420 | Os03g0201400 | - | Detail |
| C1H3g14289 | 3:4,739,963-4,742,807 | + | C2H3g05108 | CX3g026129 | LOC_Os03g10440 | Os03g0201500 | OsMORE1a | Detail |
| C1H3g07517 | 3:4,743,790-4,746,012 | - | C2H3g04674 | CX3g029780 | LOC_Os03g10450 | Os03g0201600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H11g16617 | 11:6,588,213-6,590,711 | + | C1H11g18756 | CX11g013620 | LOC_Os11g13890 | Os11g0242800 | LHCB5 | Detail |
| C2H11g07210 | 11:6,608,541-6,609,767 | - | C1H11g23539 | CX11g012343 | LOC_Os11g13930 | Os11g0243300 | - | Detail |
| C2H11g22247 | 11:6,662,077-6,663,443 | - | C1H11g24971 | - | - | - | - | Detail |
| C2H11g07080 | 11:6,682,476-6,687,687 | - | C1H11g21033 | CX11g013197 | LOC_Os11g13970 | Os11g0244100 | - | Detail |
| C2H11g17324 | 11:6,689,282-6,698,610 | - | C1H11g12260 | CX11g014379 | LOC_Os11g13990 | Os11g0244300 | - | Detail |
| C2H11g17507 | 11:6,702,569-6,703,801 | - | C1H11g04021 | CX11g013437 | LOC_Os11g14000 | Os11g0244600 | - | Detail |
| C2H11g05464 | 11:6,707,795-6,715,642 | - | C1H11g19482 | CX11g011026 | LOC_Os11g14010 | Os11g0244800 | OsAL11 | Detail |
| C2H11g09302 | 11:6,718,859-6,721,380 | - | C1H11g13582 | CX11g015026 | LOC_Os11g14020 | Os11g0244900 | - | Detail |
| C2H11g20255 | 11:6,723,159-6,725,421 | + | C1H11g11117 | CX11g013756 | LOC_Os11g14040 | Os11g0245100 | OsGSTZ4 | Detail |
| C2H11g28082 | 11:6,730,924-6,736,237 | + | C1H11g29483 | CX11g012888 | LOC_Os11g14050 | Os11g0245200 | - | Detail |
| C2H11g17213 | 11:6,755,649-6,756,994 | - | C1H11g17645 | CX11g012383 | LOC_Os11g14070 | Os11g0245500 | - | Detail |
| C2H11g13626 | 11:6,760,202-6,761,177 | - | C1H11g17645 | CX11g012383 | LOC_Os11g14070 | Os11g0245500 | - | Detail |
| C2H11g11191 | 11:6,765,271-6,765,546 | - | C1H11g30164 | - | - | - | - | Detail |
| C2H11g27352 | 11:6,769,870-6,773,093 | - | C1H11g06906 | CX11g013200 | LOC_Os11g14080 | Os11g0543500 | - | Detail |
| C2H11g23405 | 11:6,784,824-6,789,371 | + | C1H11g13649 | CX11g013795 | LOC_Os11g14110 | Os11g0245800 | - | Detail |
| C2H11g24729 | 11:6,805,484-6,808,148 | + | C1H11g30708 | CX11g014051 | LOC_Os11g14130 | Os11g0246100 | - | Detail |
| C2H11g10381 | 11:6,813,989-6,814,504 | + | C1H11g27210 | - | - | - | - | Detail |
| C2H11g11200 | 11:6,814,659-6,815,815 | + | - | - | - | Os11g0246166 | - | Detail |
| C2H11g25580 | 11:6,854,357-6,855,650 | - | C1H11g22516 | CX11g011999 | - | - | - | Detail |
| C2H11g25244 | 11:6,856,904-6,864,340 | + | C1H11g25281 | CX11g013274 | LOC_Os11g14170 | Os11g0246600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |