| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g04729 | 3:4,611,926-4,613,460 | - | C2H3g24222 | CX3g030929 | LOC_Os03g10210 | Os03g0198600 | HOX12, Oshox12, OsHox12, GT1 | Detail |
| C1H3g24941 | 3:4,626,118-4,626,506 | + | C2H3g01513 | - | - | - | - | Detail |
| C1H3g23090 | 3:4,634,713-4,636,287 | - | C2H3g16295 | CX3g026889 | LOC_Os03g10220 | - | - | Detail |
| C1H3g13438 | 3:4,637,520-4,640,553 | - | C2H3g19804 | CX3g026154 | LOC_Os03g10224 | Os03g0198900 | - | Detail |
| C1H3g16749 | 3:4,640,745-4,645,102 | + | C2H3g09522 | CX3g028745 | LOC_Os03g10230 | Os03g0199000 | - | Detail |
| C1H3g12272 | 3:4,650,035-4,651,210 | + | C2H3g01585 | CX3g029096 | LOC_Os03g10240 | Os03g0199100 | - | Detail |
| C1H3g00274 | 3:4,660,923-4,662,003 | - | C2H3g23420 | CX3g031305 | LOC_Os03g10260 | Os03g0199500 | - | Detail |
| C1H3g07008 | 3:4,678,681-4,679,923 | + | C2H3g26891 | CX3g025392 | LOC_Os03g10300 | Os03g0200000 | - | Detail |
| C1H3g12286 | 3:4,687,802-4,689,563 | + | C2H3g01636 | CX3g029912 | LOC_Os03g10320 | Os03g0200200 | - | Detail |
| C1H3g29696 | 3:4,695,612-4,696,359 | + | C2H3g23926 | CX3g028962 | - | - | - | Detail |
| C1H3g13020 | 3:4,697,511-4,699,802 | + | C2H3g07176 | CX3g025427 | LOC_Os03g10340 | Os03g0200500 | - | Detail |
| C1H3g29298 | 3:4,699,933-4,704,069 | - | C2H3g17766 | CX3g027963 | LOC_Os03g10350 | Os03g0200600 | OsTPR075 | Detail |
| C1H3g01933 | 3:4,707,172-4,710,106 | - | C2H3g08890 | CX3g025362 | LOC_Os03g10360 | Os03g0200700 | - | Detail |
| C1H3g30301 | 3:4,711,278-4,713,578 | - | C2H3g09465 | CX3g031231 | LOC_Os03g10370 | Os03g0200800 | - | Detail |
| C1H3g28372 | 3:4,717,317-4,719,594 | + | C2H3g19650 | CX3g028366 | LOC_Os03g10390 | Os03g0201000 | - | Detail |
| C1H3g07769 | 3:4,719,979-4,724,128 | - | C2H3g21201 | CX3g026809 | LOC_Os03g10400 | Os03g0201100 | - | Detail |
| C1H3g03267 | 3:4,724,286-4,726,332 | + | C2H3g08749 | - | LOC_Os03g10410 | Os03g0201200 | - | Detail |
| C1H3g26783 | 3:4,726,856-4,729,237 | + | C2H3g27980 | CX3g027641 | LOC_Os03g10420 | Os03g0201400 | - | Detail |
| C1H3g14289 | 3:4,739,963-4,742,807 | + | C2H3g05108 | CX3g026129 | LOC_Os03g10440 | Os03g0201500 | OsMORE1a | Detail |
| C1H3g07517 | 3:4,743,790-4,746,012 | - | C2H3g04674 | CX3g029780 | LOC_Os03g10450 | Os03g0201600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g10979 | 1:29,560,996-29,563,839 | + | C1H1g03530 | CX1g007095 | LOC_Os01g57270 | Os01g0781100 | - | Detail |
| C2H1g08583 | 1:29,572,328-29,576,187 | + | C1H1g23430 | CX1g006355 | LOC_Os01g57280 | Os01g0781200 | Pi64 | Detail |
| C2H1g19777 | 1:29,577,746-29,582,074 | - | C1H1g05330 | CX1g001870 | LOC_Os01g57350 | Os01g0782200 | - | Detail |
| C2H1g15609 | 1:29,583,700-29,587,880 | - | C1H1g16270 | CX1g002627 | LOC_Os01g57360 | Os01g0782500 | - | Detail |
| C2H1g26173 | 1:29,594,858-29,598,908 | - | C1H1g26913 | CX1g006567 | LOC_Os01g57370 | Os01g0782800 | OsCNGC15 | Detail |
| C2H1g11682 | 1:29,600,538-29,602,950 | - | C1H1g01155 | - | LOC_Os01g57380 | - | - | Detail |
| C2H1g20034 | 1:29,608,459-29,608,843 | - | C1H1g18891 | CX1g004406 | LOC_Os01g57400 | Os01g0783000 | OsLysMe2 | Detail |
| C2H1g00339 | 1:29,614,233-29,620,750 | - | C1H1g14162 | CX1g003400 | LOC_Os01g57420 | Os01g0783200 | - | Detail |
| C2H1g03808 | 1:29,623,079-29,625,594 | - | C1H1g12309 | CX1g003974 | LOC_Os01g57440 | Os01g0783400 | - | Detail |
| C2H1g08412 | 1:29,626,290-29,629,368 | - | C1H1g16380 | CX1g004136 | LOC_Os01g57450 | Os01g0783500 | - | Detail |
| C2H1g00954 | 1:29,631,607-29,633,325 | + | C1H1g15791 | CX1g004706 | LOC_Os01g57460 | Os01g0783600 | - | Detail |
| C2H1g29910 | 1:29,636,955-29,648,497 | + | C1H1g11033 | CX1g004924 | LOC_Os01g57490 | Os01g0783900 | SDRLP-11 | Detail |
| C2H1g11023 | 1:29,651,950-29,656,765 | + | C1H1g03347 | CX1g000763 | LOC_Os01g57510 | Os01g0784200 | SDRLK-15 | Detail |
| C2H1g15908 | 1:29,662,917-29,664,948 | + | C1H1g21188 | CX1g000103 | LOC_Os01g57540 | Os01g0784500 | - | Detail |
| C2H1g25310 | 1:29,666,737-29,671,632 | + | C1H1g07023 | CX1g003790 | LOC_Os01g57550 | Os01g0784600 | - | Detail |
| C2H1g01398 | 1:29,669,989-29,677,661 | - | C1H1g21188 | CX1g000103 | LOC_Os01g57560 | Os01g0784700 | SDRLK-3 | Detail |
| C2H1g01374 | 1:29,686,538-29,690,244 | + | C1H1g11148 | CX1g002544 | LOC_Os01g57570 | Os01g0784800 | - | Detail |
| C2H1g04781 | 1:29,691,804-29,695,625 | - | C1H1g11922 | CX1g002670 | LOC_Os01g57580 | Os01g0784900 | NSP1, OsbHLH069 | Detail |
| C2H1g08294 | 1:29,695,777-29,696,037 | - | C1H1g11922 | CX1g002670 | LOC_Os01g57580 | Os01g0784900 | NSP1, OsbHLH069 | Detail |
| C2H1g25385 | 1:29,706,172-29,707,086 | - | C1H1g08010 | - | - | Os01g0834150 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |