| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g04729 | 3:4,611,926-4,613,460 | - | C2H3g24222 | CX3g030929 | LOC_Os03g10210 | Os03g0198600 | HOX12, Oshox12, OsHox12, GT1 | Detail |
| C1H3g24941 | 3:4,626,118-4,626,506 | + | C2H3g01513 | - | - | - | - | Detail |
| C1H3g23090 | 3:4,634,713-4,636,287 | - | C2H3g16295 | CX3g026889 | LOC_Os03g10220 | - | - | Detail |
| C1H3g13438 | 3:4,637,520-4,640,553 | - | C2H3g19804 | CX3g026154 | LOC_Os03g10224 | Os03g0198900 | - | Detail |
| C1H3g16749 | 3:4,640,745-4,645,102 | + | C2H3g09522 | CX3g028745 | LOC_Os03g10230 | Os03g0199000 | - | Detail |
| C1H3g12272 | 3:4,650,035-4,651,210 | + | C2H3g01585 | CX3g029096 | LOC_Os03g10240 | Os03g0199100 | - | Detail |
| C1H3g00274 | 3:4,660,923-4,662,003 | - | C2H3g23420 | CX3g031305 | LOC_Os03g10260 | Os03g0199500 | - | Detail |
| C1H3g07008 | 3:4,678,681-4,679,923 | + | C2H3g26891 | CX3g025392 | LOC_Os03g10300 | Os03g0200000 | - | Detail |
| C1H3g12286 | 3:4,687,802-4,689,563 | + | C2H3g01636 | CX3g029912 | LOC_Os03g10320 | Os03g0200200 | - | Detail |
| C1H3g29696 | 3:4,695,612-4,696,359 | + | C2H3g23926 | CX3g028962 | - | - | - | Detail |
| C1H3g13020 | 3:4,697,511-4,699,802 | + | C2H3g07176 | CX3g025427 | LOC_Os03g10340 | Os03g0200500 | - | Detail |
| C1H3g29298 | 3:4,699,933-4,704,069 | - | C2H3g17766 | CX3g027963 | LOC_Os03g10350 | Os03g0200600 | OsTPR075 | Detail |
| C1H3g01933 | 3:4,707,172-4,710,106 | - | C2H3g08890 | CX3g025362 | LOC_Os03g10360 | Os03g0200700 | - | Detail |
| C1H3g30301 | 3:4,711,278-4,713,578 | - | C2H3g09465 | CX3g031231 | LOC_Os03g10370 | Os03g0200800 | - | Detail |
| C1H3g28372 | 3:4,717,317-4,719,594 | + | C2H3g19650 | CX3g028366 | LOC_Os03g10390 | Os03g0201000 | - | Detail |
| C1H3g07769 | 3:4,719,979-4,724,128 | - | C2H3g21201 | CX3g026809 | LOC_Os03g10400 | Os03g0201100 | - | Detail |
| C1H3g03267 | 3:4,724,286-4,726,332 | + | C2H3g08749 | - | LOC_Os03g10410 | Os03g0201200 | - | Detail |
| C1H3g26783 | 3:4,726,856-4,729,237 | + | C2H3g27980 | CX3g027641 | LOC_Os03g10420 | Os03g0201400 | - | Detail |
| C1H3g14289 | 3:4,739,963-4,742,807 | + | C2H3g05108 | CX3g026129 | LOC_Os03g10440 | Os03g0201500 | OsMORE1a | Detail |
| C1H3g07517 | 3:4,743,790-4,746,012 | - | C2H3g04674 | CX3g029780 | LOC_Os03g10450 | Os03g0201600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g07422 | 5:22,642,574-22,644,790 | - | C1H5g30870 | CX5g038064 | LOC_Os05g46690 | Os05g0544600 | - | Detail |
| C2H5g03355 | 5:22,648,184-22,650,047 | - | C1H5g10393 | CX5g038009 | LOC_Os05g46710 | Os05g0544900 | - | Detail |
| C2H5g19788 | 5:22,654,646-22,659,830 | + | C1H5g19841 | CX5g039949 | LOC_Os05g46720 | Os05g0545000 | - | Detail |
| C2H5g01084 | 5:22,665,060-22,675,567 | - | C1H5g28488 | CX5g039251 | LOC_Os05g46740 | Os05g0545300 | - | Detail |
| C2H5g27152 | 5:22,681,596-22,682,909 | - | C1H5g07171 | CX5g040715 | LOC_Os05g46760 | Os05g0545400 | - | Detail |
| C2H5g05544 | 5:22,686,480-22,691,402 | + | - | - | - | - | - | Detail |
| C2H5g06020 | 5:22,696,950-22,702,172 | + | C1H5g28842 | CX5g040995 | LOC_Os05g46860 | Os05g0545600 | - | Detail |
| C2H5g12310 | 5:22,706,543-22,707,058 | + | C1H5g11625 | CX5g038306 | LOC_Os05g46790 | Os05g0546400 | - | Detail |
| C2H5g18437 | 5:22,708,692-22,710,601 | + | C1H5g30534 | CX5g039852 | LOC_Os05g46800 | Os05g0545900 | - | Detail |
| C2H5g16888 | 5:22,715,981-22,716,661 | + | C1H5g01044 | CX5g040967 | LOC_Os05g46830 | Os05g0546300 | - | Detail |
| C2H5g27430 | 5:22,719,194-22,719,894 | - | - | CX5g039150 | - | - | - | Detail |
| C2H5g26619 | 5:22,722,084-22,722,893 | + | C1H5g21422 | CX5g038306 | LOC_Os05g46840 | Os05g0546400 | - | Detail |
| C2H5g22705 | 5:22,724,763-22,726,511 | - | C1H5g08788 | CX5g037119 | LOC_Os05g47446 | Os05g0547850 | OsPDCD5 | Detail |
| C2H5g02769 | 5:22,732,142-22,732,777 | + | C1H5g20241 | CX5g036931 | LOC_Os05g47470 | Os05g0548100 | - | Detail |
| C2H5g11129 | 5:22,735,303-22,736,253 | - | C1H5g30022 | CX5g038940 | LOC_Os05g47480 | Os05g0548200 | - | Detail |
| C2H5g21680 | 5:22,738,159-22,744,169 | + | C1H5g19984 | CX5g039873 | LOC_Os05g47490 | Os05g0548300 | - | Detail |
| C2H5g06103 | 5:22,746,540-22,753,216 | + | C1H5g17282 | CX5g036974 | LOC_Os05g47500 | Os05g0548500 | - | Detail |
| C2H5g19664 | 5:22,753,521-22,754,855 | + | C1H5g08583 | CX5g038468 | LOC_Os05g47510 | Os05g0548600 | qGSN5 | Detail |
| C2H5g21416 | 5:22,755,411-22,757,608 | - | C1H5g05315 | CX5g040999 | LOC_Os05g47530 | Os05g0548800 | - | Detail |
| C2H5g15278 | 5:22,758,416-22,762,952 | - | C1H5g25644 | CX5g037857 | LOC_Os05g47545 | Os05g0548900 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |