| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g08748 | 3:4,317,267-4,318,514 | - | C2H3g25674 | CX3g026299 | LOC_Os03g09850 | Os03g0194300 | - | Detail |
| C1H3g06307 | 3:4,318,899-4,323,842 | - | C2H3g24777 | CX3g029479 | LOC_Os03g14600 | Os03g0822100 | - | Detail |
| C1H3g08609 | 3:4,327,251-4,329,205 | + | C2H3g25314 | CX3g025342 | LOC_Os03g09860 | Os03g0194400 | - | Detail |
| C1H3g26915 | 3:4,329,951-4,332,300 | + | C2H3g01850 | CX3g029454 | LOC_Os03g09870 | Os03g0194500 | - | Detail |
| C1H3g23931 | 3:4,333,979-4,334,563 | + | C2H3g10528 | CX3g027093 | LOC_Os03g09880 | Os03g0194600 | - | Detail |
| C1H3g18007 | 3:4,335,481-4,336,334 | - | C2H3g10333 | - | - | - | - | Detail |
| C1H3g25501 | 3:4,342,515-4,344,762 | + | C2H3g02717 | CX3g027004 | LOC_Os03g09900 | Os03g0194900 | - | Detail |
| C1H3g25063 | 3:4,354,789-4,359,262 | + | C2H3g11804 | CX3g028012 | LOC_Os03g09910 | Os03g0195100 | OsALD1 | Detail |
| C1H3g19160 | 3:4,359,789-4,363,478 | - | C2H3g05380 | CX3g030407 | LOC_Os03g09920 | Os03g0195200 | - | Detail |
| C1H3g06347 | 3:4,364,408-4,368,483 | - | C2H3g24496 | CX3g025617 | LOC_Os03g09930 | Os03g0195300 | - | Detail |
| C1H3g05383 | 3:4,371,869-4,376,917 | - | C2H3g09781 | CX3g025665 | LOC_Os03g09940 | Os03g0195450 | - | Detail |
| C1H3g00202 | 3:4,374,196-4,375,756 | + | - | - | - | Os03g0195475 | - | Detail |
| C1H3g25788 | 3:4,378,862-4,380,038 | + | - | CX3g030787 | - | - | - | Detail |
| C1H3g21097 | 3:4,396,054-4,396,413 | + | C2H3g05423 | CX3g030854 | LOC_Os03g09970 | Os03g0195800 | - | Detail |
| C1H3g03606 | 3:4,396,700-4,399,771 | + | C2H3g05423 | CX3g030854 | LOC_Os03g09970 | Os03g0195800 | - | Detail |
| C1H3g03766 | 3:4,400,367-4,400,699 | - | C2H3g02477 | - | - | - | - | Detail |
| C1H3g10488 | 3:4,404,725-4,408,629 | + | C2H3g12869 | CX3g026812 | LOC_Os03g09980 | Os03g0196000 | - | Detail |
| C1H3g16837 | 3:4,411,823-4,412,239 | - | C2H3g07370 | CX3g026017 | - | Os03g0196250 | - | Detail |
| C1H3g12862 | 3:4,428,635-4,434,023 | + | C2H3g22370 | CX3g027746 | LOC_Os03g10030 | Os03g0196400 | - | Detail |
| C1H3g19849 | 3:4,438,240-4,438,680 | - | C2H3g27922 | - | - | Os03g0196450 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g06828 | 3:2,212,313-2,215,256 | + | C1H3g08260 | CX3g030037 | LOC_Os03g05270 | Os03g0145900 | - | Detail |
| C2H3g21623 | 3:2,216,705-2,217,630 | - | C1H3g20268 | CX3g028017 | - | - | - | Detail |
| C2H3g05886 | 3:2,217,855-2,222,882 | + | C1H3g29909 | CX3g029228 | LOC_Os03g05280 | Os03g0146000 | - | Detail |
| C2H3g28085 | 3:2,226,825-2,228,647 | - | C1H3g25012 | CX3g029808 | LOC_Os03g05290 | Os03g0146100 | - | Detail |
| C2H3g09242 | 3:2,234,286-2,234,757 | + | C1H3g19868 | CX3g025472 | LOC_Os03g05300 | Os03g0146300 | - | Detail |
| C2H3g13895 | 3:2,238,644-2,242,941 | + | C1H3g27335 | CX3g025739 | LOC_Os03g05310 | Os03g0146400 | - | Detail |
| C2H3g14044 | 3:2,245,615-2,245,935 | + | C1H3g02545 | CX3g026084 | - | - | - | Detail |
| C2H3g11885 | 3:2,245,944-2,248,740 | + | C1H3g29062 | CX3g026084 | LOC_Os03g05320 | Os03g0146500 | - | Detail |
| C2H3g15286 | 3:2,248,961-2,270,805 | + | C1H3g17015 | CX3g025922 | LOC_Os03g05330 | Os03g0146600 | - | Detail |
| C2H3g18202 | 3:2,288,713-2,299,155 | - | C1H3g30836 | CX3g029888 | LOC_Os03g05390 | Os03g0147400 | - | Detail |
| C2H3g23117 | 3:2,308,929-2,313,905 | - | C1H3g06760 | CX3g025434 | LOC_Os03g05420 | Os03g0147700 | - | Detail |
| C2H3g11846 | 3:2,314,623-2,316,895 | + | C1H3g11420 | CX3g028095 | LOC_Os03g05430 | Os03g0147900 | - | Detail |
| C2H3g18230 | 3:2,317,489-2,318,731 | - | C1H3g01679 | CX3g027224 | LOC_Os03g05440 | Os03g0148000 | - | Detail |
| C2H3g10578 | 3:2,323,802-2,324,729 | - | C1H3g05732 | CX3g025933 | LOC_Os03g05450 | Os03g0148300 | - | Detail |
| C2H3g08315 | 3:2,327,349-2,328,680 | - | C1H3g20087 | CX3g026676 | LOC_Os03g05460 | Os03g0148400 | - | Detail |
| C2H3g07329 | 3:2,334,599-2,338,463 | + | C1H3g24625 | CX3g026748 | LOC_Os03g05470 | Os03g0148700 | - | Detail |
| C2H3g09418 | 3:2,341,352-2,344,058 | - | C1H3g03956 | CX3g025264 | LOC_Os03g05480 | Os03g0148800 | - | Detail |
| C2H3g30161 | 3:2,358,159-2,358,798 | + | C1H3g20130 | CX3g031194 | LOC_Os03g05500 | Os03g0149000 | - | Detail |
| C2H3g15126 | 3:2,361,784-2,363,363 | - | C1H3g20743 | CX3g024956 | LOC_Os03g05510 | Os03g0149100 | CRL1, crl1, crl1*, ARL1, ARL1/CRL1 | Detail |
| C2H3g27191 | 3:2,374,900-2,378,018 | - | C1H3g13230 | CX3g027575 | LOC_Os03g05520 | Os03g0149200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |