| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g14873 | 3:4,160,670-4,175,428 | - | C2H3g15678 | CX3g025401 | LOC_Os03g09110 | Os03g0191100 | - | Detail |
| C1H3g14671 | 3:4,180,893-4,182,123 | - | C2H3g21550 | CX3g026471 | LOC_Os03g09120 | Os03g0191200 | - | Detail |
| C1H3g14495 | 3:4,193,654-4,196,002 | + | C2H3g28466 | CX3g028388 | LOC_Os03g09140 | Os03g0191400 | OsRab6B2, OsRab6a | Detail |
| C1H3g25069 | 3:4,198,716-4,202,590 | - | C2H3g00905 | CX3g027338 | LOC_Os03g09150 | Os03g0191700 | - | Detail |
| C1H3g30469 | 3:4,204,904-4,205,722 | + | C2H3g19135 | CX3g029377 | LOC_Os03g09160 | Os03g0191800 | - | Detail |
| C1H3g18769 | 3:4,211,752-4,212,642 | - | C2H3g16037 | CX3g028606 | LOC_Os03g09170 | Os03g0191900 | - | Detail |
| C1H3g13867 | 3:4,217,168-4,220,660 | - | C2H3g14345 | CX3g025223 | LOC_Os03g09180 | Os03g0192000 | - | Detail |
| C1H3g13109 | 3:4,221,101-4,223,221 | + | C2H3g00220 | CX3g026535 | LOC_Os03g09190 | Os03g0192100 | - | Detail |
| C1H3g24183 | 3:4,223,947-4,226,860 | - | C2H3g04064 | CX3g029681 | LOC_Os03g09200 | Os03g0192300 | - | Detail |
| C1H3g22125 | 3:4,238,482-4,241,113 | - | C2H3g23777 | CX3g026243 | LOC_Os03g09210 | Os03g0192400 | - | Detail |
| C1H3g21423 | 3:4,246,113-4,251,246 | + | C2H3g14962 | CX3g025389 | LOC_Os03g09220 | Os03g0192500 | PP45, OsPP45, BIPP2C1 | Detail |
| C1H3g29007 | 3:4,251,888-4,253,173 | - | C2H3g01547 | CX3g029005 | LOC_Os03g09230 | Os03g0192600 | - | Detail |
| C1H3g26414 | 3:4,256,187-4,260,220 | - | C2H3g00630 | CX3g028884 | LOC_Os03g09250 | Os03g0192700 | INO1, RINO1 | Detail |
| C1H3g18179 | 3:4,270,218-4,278,454 | + | C2H3g01275 | CX3g027446 | LOC_Os03g09270 | Os03g0192900 | - | Detail |
| C1H3g11049 | 3:4,281,798-4,288,027 | + | C2H3g19711 | CX3g025926 | LOC_Os03g09280 | Os03g0193000 | - | Detail |
| C1H3g04153 | 3:4,289,146-4,291,323 | + | C2H3g11800 | CX3g025810 | LOC_Os03g09290 | Os03g0193075 | - | Detail |
| C1H3g25160 | 3:4,292,110-4,294,322 | + | C2H3g07804 | CX3g028060 | LOC_Os03g09300 | Os03g0191700 | - | Detail |
| C1H3g05489 | 3:4,295,865-4,300,437 | - | C2H3g11506 | CX3g027000 | LOC_Os03g09310 | Os03g0193225 | - | Detail |
| C1H3g15014 | 3:4,307,648-4,308,589 | + | C2H3g05261 | CX3g026217 | LOC_Os03g09820 | Os03g0193600 | - | Detail |
| C1H3g23845 | 3:4,309,523-4,310,731 | - | C2H3g20661 | CX3g030575 | LOC_Os03g09840 | Os03g0194100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g07939 | 1:30,166,036-30,168,196 | - | C1H1g19538 | CX1g005593 | LOC_Os01g58730 | Os01g0801500 | - | Detail |
| C2H1g30108 | 1:30,168,609-30,171,707 | - | C1H1g05474 | CX1g003950 | LOC_Os01g58740 | Os01g0801600 | - | Detail |
| C2H1g26051 | 1:30,172,897-30,176,258 | - | C1H1g14045 | CX1g005695 | LOC_Os01g58750 | Os01g0801700 | OsGCD1 | Detail |
| C2H1g19105 | 1:30,182,459-30,184,419 | - | - | - | - | - | - | Detail |
| C2H1g24587 | 1:30,197,757-30,202,818 | + | C1H1g01326 | CX1g000361 | LOC_Os01g58790 | Os01g0802100 | OsIspE, IspE, OsCMK, CMK | Detail |
| C2H1g08686 | 1:30,216,620-30,218,774 | - | C1H1g15075 | CX1g002565 | LOC_Os01g58860 | Os01g0802700 | OsPIN9 | Detail |
| C2H1g30330 | 1:30,232,946-30,233,720 | + | C1H1g24422 | CX1g002172 | LOC_Os01g58890 | Os01g0803200 | - | Detail |
| C2H1g25597 | 1:30,243,490-30,245,237 | - | C1H1g07293 | CX1g000223 | LOC_Os01g58910 | Os01g0803300 | - | Detail |
| C2H1g05023 | 1:30,257,504-30,259,030 | + | C1H1g24602 | CX1g005013 | LOC_Os01g58960 | Os01g0803800 | CYP94D12, OsCYP94D12 | Detail |
| C2H1g26033 | 1:30,261,999-30,263,537 | + | C1H1g19345 | CX1g005013 | LOC_Os01g58970 | Os01g0803900 | CYP94D11, OsCYP94D11, OsCYPq1 | Detail |
| C2H1g28126 | 1:30,286,808-30,288,426 | - | C1H1g26715 | CX1g005195 | LOC_Os01g59060 | Os01g0805000 | - | Detail |
| C2H1g18483 | 1:30,291,209-30,292,424 | - | C1H1g02848 | CX1g000028 | LOC_Os01g59080 | Os01g0805200 | - | Detail |
| C2H1g25136 | 1:30,292,535-30,298,269 | + | C1H1g13654 | CX1g000520 | LOC_Os01g59100 | Os01g0805400 | Os6 | Detail |
| C2H1g18311 | 1:30,299,357-30,299,566 | - | C1H12g00195 | - | - | - | - | Detail |
| C2H1g25416 | 1:30,299,605-30,300,492 | - | - | CX1g005761 | - | - | - | Detail |
| C2H1g00011 | 1:30,300,738-30,301,334 | + | C1H1g23718 | CX1g002439 | LOC_Os01g59110 | Os01g0805500 | - | Detail |
| C2H1g05127 | 1:30,302,551-30,303,204 | + | C1H1g23718 | CX1g002439 | LOC_Os01g59110 | Os01g0805500 | - | Detail |
| C2H1g05794 | 1:30,303,559-30,306,662 | - | C1H1g31482 | CX1g004982 | LOC_Os01g59120 | Os01g0805600 | Orysa;CycB1;1 | Detail |
| C2H1g03484 | 1:30,307,605-30,313,872 | - | C1H1g30942 | CX1g001600 | LOC_Os01g59130 | Os01g0805700 | - | Detail |
| C2H1g17768 | 1:30,315,471-30,319,142 | - | C1H1g01953 | CX1g000155 | LOC_Os01g59140 | Os01g0805800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |