| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g25404 | 1:13,118,116-13,134,982 | - | C2H1g11601 | CX1g006558 | LOC_Os01g25386 | Os01g0356400 | - | Detail |
| C1H1g30996 | 1:13,162,691-13,168,953 | - | C2H1g19253 | CX1g001500 | LOC_Os01g25440 | Os01g0356500 | - | Detail |
| C1H1g17978 | 1:13,297,268-13,304,433 | + | C2H1g11897 | CX1g007156 | LOC_Os01g25484 | Os01g0357100 | - | Detail |
| C1H1g12222 | 1:13,304,731-13,305,305 | + | C2H1g07062 | - | LOC_Os01g25500 | Os01g0357200 | - | Detail |
| C1H1g10812 | 1:13,308,645-13,308,990 | + | C2H1g10094 | CX1g005128 | - | - | - | Detail |
| C1H1g18486 | 1:13,310,639-13,311,100 | + | C2H1g25629 | CX1g007156 | LOC_Os01g25484 | Os01g0357500 | - | Detail |
| C1H1g05672 | 1:13,323,355-13,328,897 | + | - | - | - | - | - | Detail |
| C1H1g04222 | 1:13,333,217-13,333,567 | - | C2H1g00631 | CX1g003390 | LOC_Os01g25540 | Os01g0357900 | - | Detail |
| C1H1g19001 | 1:13,342,551-13,342,901 | - | C2H1g06726 | CX1g003390 | LOC_Os01g25560 | Os01g0358100 | - | Detail |
| C1H1g30276 | 1:13,352,987-13,359,574 | - | C2H1g25270 | CX1g005070 | LOC_Os01g25600 | Os01g0358300 | - | Detail |
| C1H1g20203 | 1:13,359,857-13,361,558 | + | C2H1g10144 | CX1g001263 | LOC_Os01g25610 | Os01g0358400 | - | Detail |
| C1H1g14226 | 1:13,394,080-13,395,387 | + | C2H1g03894 | - | - | Os01g0358800 | - | Detail |
| C1H1g01348 | 1:13,395,873-13,396,181 | - | C2H1g07720 | - | LOC_Os01g25660 | Os01g0358900 | - | Detail |
| C1H1g10195 | 1:13,401,141-13,406,372 | - | C2H1g08239 | CX1g003464 | LOC_Os01g25720 | Os01g0359400 | - | Detail |
| C1H1g08669 | 1:13,436,575-13,439,518 | - | C2H1g09088 | CX1g006302 | LOC_Os01g25760 | Os01g0359800 | - | Detail |
| C1H1g24472 | 1:13,440,495-13,441,116 | - | C2H1g10155 | CX1g006302 | LOC_Os01g25760 | Os01g0359800 | - | Detail |
| C1H1g00543 | 1:13,461,919-13,468,646 | - | C2H1g10155 | CX1g006302 | LOC_Os01g25810 | Os01g0360100 | - | Detail |
| C1H1g22392 | 1:13,479,760-13,486,287 | - | C2H1g17762 | CX1g005188 | LOC_Os01g25820 | Os01g0360200 | - | Detail |
| C1H1g17695 | 1:13,512,529-13,514,769 | - | C2H1g27512 | CX1g006931 | LOC_Os01g25880 | Os01g0360600 | - | Detail |
| C1H1g06501 | 1:13,555,322-13,555,955 | - | C2H1g24244 | CX1g003047 | LOC_Os01g26039 | Os01g0361500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g23844 | 5:860,604-861,531 | + | C1H5g04400 | CX5g039032 | LOC_Os05g02730 | Os05g0118700 | LSY1, OsWOX3 | Detail |
| C2H5g12416 | 5:879,289-881,285 | + | - | CX5g039138 | LOC_Os05g02740 | Os05g0118800 | - | Detail |
| C2H5g07908 | 5:890,481-891,241 | - | C1H5g07583 | CX5g037492 | LOC_Os05g02770 | Os05g0119200 | OsGPRP3 | Detail |
| C2H5g12083 | 5:893,287-895,434 | - | C1H5g14848 | CX5g036862 | LOC_Os05g02780 | - | - | Detail |
| C2H5g19310 | 5:895,991-900,450 | + | C1H5g27829 | - | - | Os05g0119350 | - | Detail |
| C2H5g27633 | 5:896,625-900,818 | - | C1H5g12144 | CX5g038855 | LOC_Os05g02790 | Os05g0119400 | - | Detail |
| C2H5g28586 | 5:902,862-904,767 | + | C1H5g31502 | CX5g039714 | LOC_Os05g02810 | Os05g0119600 | - | Detail |
| C2H5g20475 | 5:906,134-910,098 | - | C1H5g05932 | CX5g039871 | LOC_Os05g02820 | Os05g0119700 | - | Detail |
| C2H5g16207 | 5:914,588-915,130 | + | - | CX5g040523 | - | - | - | Detail |
| C2H5g27318 | 5:924,283-926,397 | - | C1H5g25594 | CX5g040974 | LOC_Os05g02880 | Os05g0120100 | - | Detail |
| C2H5g09848 | 5:958,894-964,680 | + | C1H5g31585 | CX5g037865 | LOC_Os05g02940 | Os05g0120700 | - | Detail |
| C2H5g03610 | 5:968,282-969,866 | + | C1H5g20255 | CX5g040092 | LOC_Os05g02970 | Os05g0120800 | - | Detail |
| C2H5g24004 | 5:980,610-982,014 | + | C1H5g25679 | CX5g038448 | LOC_Os05g02990 | Os05g0121000 | - | Detail |
| C2H5g03745 | 5:983,992-993,664 | + | C1H5g01702 | CX5g038251 | - | Os05g0121100 | - | Detail |
| C2H5g13518 | 5:995,632-999,842 | - | C1H5g21915 | CX5g038381 | LOC_Os05g03000 | Os05g0121200 | - | Detail |
| C2H5g27724 | 5:1,001,134-1,006,398 | + | C1H5g23502 | CX5g037956 | LOC_Os05g03020 | Os05g0121400 | - | Detail |
| C2H5g29033 | 5:1,014,404-1,018,718 | - | C1H5g18884 | CX5g038220 | LOC_Os05g03040 | Os05g0121600 | RSR1, OsTOE1, AP2/EREBP#090, AP2/EREBP90 | Detail |
| C2H5g03539 | 5:1,049,068-1,053,189 | - | C1H5g22491 | CX5g039481 | LOC_Os05g03050 | Os05g0121700 | - | Detail |
| C2H5g07687 | 5:1,059,397-1,063,439 | + | C1H5g25689 | CX5g038840 | LOC_Os05g03060 | Os05g0121800 | - | Detail |
| C2H5g05750 | 5:1,063,498-1,065,255 | - | C1H5g18041 | CX5g041093 | LOC_Os05g03070 | Os05g0121900 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |