| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g13450 | 3:4,033,717-4,035,834 | + | C2H3g10684 | CX3g026706 | LOC_Os03g08860 | Os03g0187600 | OsGRAM | Detail |
| C1H3g23881 | 3:4,038,014-4,039,794 | + | C2H3g13978 | CX3g030725 | LOC_Os03g08870 | Os03g0187700 | - | Detail |
| C1H3g03880 | 3:4,040,968-4,042,167 | - | C2H3g19491 | CX3g025062 | LOC_Os03g08880 | Os03g0187800 | OsPUP1 | Detail |
| C1H3g16094 | 3:4,054,214-4,059,830 | + | C2H3g07130 | CX3g031032 | LOC_Os03g08900 | Os03g0188100 | OsMATE1 | Detail |
| C1H3g05331 | 3:4,060,815-4,061,876 | - | C2H3g06873 | CX3g024958 | LOC_Os03g08920 | Os03g0188200 | - | Detail |
| C1H3g20727 | 3:4,073,530-4,075,118 | + | C2H3g17114 | CX3g029018 | LOC_Os03g08930 | Os03g0188400 | OsbHLH96 | Detail |
| C1H3g00664 | 3:4,080,251-4,080,637 | - | C2H3g22297 | CX3g027139 | - | Os03g0188500 | - | Detail |
| C1H3g17061 | 3:4,097,305-4,098,515 | + | C2H3g19207 | CX3g028802 | LOC_Os03g08960 | Os03g0188900 | - | Detail |
| C1H3g18298 | 3:4,105,353-4,105,883 | + | C2H3g07421 | CX3g026805 | LOC_Os03g08970 | Os03g0189100 | - | Detail |
| C1H3g19818 | 3:4,109,705-4,111,030 | - | C2H3g08533 | CX3g027676 | LOC_Os03g08980 | Os03g0189300 | - | Detail |
| C1H3g18359 | 3:4,111,701-4,112,398 | - | C2H3g28618 | CX3g030934 | LOC_Os03g08999 | Os03g0189400 | - | Detail |
| C1H3g16437 | 3:4,112,410-4,113,314 | - | C2H3g11626 | CX3g030934 | LOC_Os03g08999 | Os03g0189400 | - | Detail |
| C1H3g29808 | 3:4,117,433-4,117,647 | - | C2H3g03286 | CX3g030934 | LOC_Os03g09020 | Os03g0189400 | - | Detail |
| C1H3g25212 | 3:4,119,115-4,122,175 | - | C2H3g07018 | CX3g030934 | LOC_Os03g09020 | Os03g0189600 | - | Detail |
| C1H3g17759 | 3:4,130,906-4,131,652 | + | C2H3g15705 | CX3g030414 | LOC_Os03g09045 | Os03g0190000 | - | Detail |
| C1H3g10345 | 3:4,133,267-4,136,241 | - | C2H3g04200 | CX3g029542 | LOC_Os03g09060 | Os03g0190100 | - | Detail |
| C1H3g09287 | 3:4,138,896-4,142,325 | - | C2H3g20959 | CX3g031332 | LOC_Os03g09070 | Os03g0190300 | - | Detail |
| C1H3g02100 | 3:4,143,641-4,146,556 | - | - | CX3g029204 | - | Os03g0190500 | - | Detail |
| C1H3g05709 | 3:4,149,489-4,153,482 | - | C2H3g15387 | CX3g031087 | LOC_Os03g09080 | Os03g0190800 | - | Detail |
| C1H3g10832 | 3:4,155,243-4,158,318 | - | C2H3g01761 | CX3g028138 | LOC_Os03g09090 | Os03g0190900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g09624 | 1:30,787,077-30,788,245 | - | C1H1g00772 | CX1g005248 | LOC_Os01g60020 | Os01g0816100 | OsNAC4 | Detail |
| C2H1g09286 | 1:30,799,473-30,816,246 | - | C1H1g15712 | CX1g002744 | LOC_Os01g60040 | Os01g0816400 | - | Detail |
| C2H1g26961 | 1:30,828,310-30,834,847 | - | C1H1g15897 | CX1g002744 | LOC_Os01g60050 | Os01g0816500 | - | Detail |
| C2H1g04146 | 1:30,837,506-30,842,632 | + | C1H1g04794 | CX1g001742 | LOC_Os01g60060 | Os01g0816600 | - | Detail |
| C2H1g13967 | 1:30,844,373-30,844,582 | + | C1H1g04794 | CX1g001742 | LOC_Os01g60070 | Os01g0816600 | - | Detail |
| C2H1g24791 | 1:30,845,806-30,847,272 | + | C1H1g24642 | CX1g006929 | LOC_Os01g60080 | Os01g0816700 | - | Detail |
| C2H1g25178 | 1:30,847,362-30,847,664 | + | C1H1g24879 | CX1g006929 | LOC_Os01g60080 | Os01g0816700 | - | Detail |
| C2H1g12383 | 1:30,852,593-30,855,794 | - | C1H1g23182 | CX1g001408 | LOC_Os01g60110 | Os01g0817000 | - | Detail |
| C2H1g27536 | 1:30,858,990-30,862,426 | - | C1H1g20937 | CX1g001908 | LOC_Os01g60120 | Os01g0817100 | - | Detail |
| C2H1g05301 | 1:30,867,420-30,870,525 | + | C1H1g16273 | CX1g005873 | LOC_Os01g60140 | Os01g0817400 | - | Detail |
| C2H1g04044 | 1:30,871,690-30,872,622 | - | C1H1g15906 | CX1g004355 | - | Os01g0286100 | PIL15, OsPIL15, OsbHLH105 | Detail |
| C2H1g17170 | 1:30,884,562-30,888,327 | + | C1H1g14583 | CX1g000357 | LOC_Os01g60190 | Os01g0817700 | - | Detail |
| C2H1g22450 | 1:30,888,779-30,892,097 | - | C1H1g28961 | CX1g003723 | LOC_Os01g60200 | Os01g0817800 | - | Detail |
| C2H1g03576 | 1:30,903,588-30,907,758 | + | C1H1g28985 | CX1g005948 | LOC_Os01g60230 | Os01g0818000 | - | Detail |
| C2H1g16399 | 1:30,911,405-30,912,871 | + | C1H1g10378 | CX1g005236 | - | Os01g0818100 | - | Detail |
| C2H1g17192 | 1:30,922,297-30,925,172 | + | C1H1g09654 | CX1g002636 | LOC_Os01g60260 | Os01g0818300 | - | Detail |
| C2H1g08644 | 1:30,931,215-30,934,712 | + | C1H1g30151 | CX1g003042 | LOC_Os01g60270 | Os01g0818400 | - | Detail |
| C2H1g07956 | 1:30,936,955-30,947,811 | - | C1H1g03453 | CX1g000179 | LOC_Os01g60280 | Os01g0818700 | - | Detail |
| C2H1g13182 | 1:30,953,125-30,956,828 | - | - | - | LOC_Os01g60290 | Os01g0818900 | - | Detail |
| C2H1g24195 | 1:30,956,541-30,960,942 | + | C1H1g23393 | CX1g001508 | LOC_Os01g60309 | Os01g0819000 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |