| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g17927 | 3:3,906,340-3,907,266 | + | C2H3g00273 | CX3g028411 | LOC_Os03g08660 | Os03g0185000 | OsSAT2;1 | Detail |
| C1H3g12755 | 3:3,913,491-3,917,007 | - | C2H3g11839 | CX3g025419 | LOC_Os03g08680 | Os03g0185200 | - | Detail |
| C1H3g28231 | 3:3,920,806-3,921,966 | - | C2H3g29116 | CX3g025760 | LOC_Os03g08690 | Os03g0185400 | - | Detail |
| C1H3g00405 | 3:3,922,008-3,922,334 | - | C2H3g20267 | CX3g025419 | LOC_Os03g08680 | Os03g0185200 | - | Detail |
| C1H3g23204 | 3:3,924,070-3,930,584 | + | C2H3g02824 | CX3g030578 | LOC_Os03g08700 | Os03g0185500 | - | Detail |
| C1H3g14315 | 3:3,931,053-3,931,430 | + | C2H3g03896 | CX3g029404 | LOC_Os03g08710 | Os03g0185600 | - | Detail |
| C1H3g08110 | 3:3,933,849-3,935,207 | - | C2H3g03932 | CX3g029210 | LOC_Os03g08720 | Os03g0185700 | - | Detail |
| C1H3g08230 | 3:3,937,303-3,941,289 | + | C2H3g26196 | CX3g028148 | LOC_Os03g08730 | Os03g0186100 | - | Detail |
| C1H3g25573 | 3:3,954,427-3,959,552 | + | C2H3g17224 | CX3g031324 | LOC_Os03g08740 | Os03g0186500 | - | Detail |
| C1H3g14880 | 3:3,960,777-3,962,645 | - | C2H3g18825 | CX3g029023 | LOC_Os03g08754 | Os03g0186600 | OsMDP1, OsMADS47 | Detail |
| C1H3g19276 | 3:3,966,489-3,967,313 | - | C2H3g02473 | CX3g029023 | LOC_Os03g08754 | Os03g0186600 | OsMDP1, OsMADS47 | Detail |
| C1H3g04910 | 3:3,972,864-3,976,511 | + | C2H3g28859 | CX3g029172 | LOC_Os03g08770 | Os03g0186800 | - | Detail |
| C1H3g01713 | 3:3,981,399-3,982,721 | + | C2H3g12420 | CX3g026841 | LOC_Os03g08790 | Os03g0186900 | OsAP25 | Detail |
| C1H3g01138 | 3:3,983,504-3,985,286 | - | C2H3g16083 | CX3g028992 | LOC_Os03g08800 | Os03g0186950 | - | Detail |
| C1H3g25676 | 3:3,985,547-3,987,944 | + | C2H3g01321 | CX3g028590 | LOC_Os03g08810 | Os03g0187000 | - | Detail |
| C1H3g24115 | 3:3,992,222-4,001,378 | + | C2H3g18803 | CX3g028907 | LOC_Os03g08820 | Os03g0187100 | - | Detail |
| C1H3g08043 | 3:4,002,500-4,011,067 | + | C2H3g23594 | CX3g027040 | LOC_Os03g08830 | Os03g0187300 | - | Detail |
| C1H3g17315 | 3:4,011,333-4,011,896 | - | C2H3g16918 | - | LOC_Os03g08834 | Os03g0187350 | - | Detail |
| C1H3g31610 | 3:4,014,728-4,017,165 | + | C2H3g02517 | CX3g027060 | LOC_Os03g08840 | Os03g0187400 | - | Detail |
| C1H3g08919 | 3:4,025,767-4,028,539 | - | C2H3g15703 | CX3g030287 | LOC_Os03g08850 | Os03g0187500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g27265 | 3:8,406,296-8,413,114 | + | C1H3g22706 | CX3g028994 | LOC_Os03g17210 | Os03g0280700 | - | Detail |
| C2H3g20835 | 3:8,414,698-8,415,657 | + | C1H3g01230 | CX3g029125 | LOC_Os03g17220 | Os03g0280750 | - | Detail |
| C2H3g25701 | 3:8,416,159-8,419,177 | - | C1H3g29688 | CX3g025025 | LOC_Os03g17230 | Os03g0280800 | OsUXS1 | Detail |
| C2H3g19709 | 3:8,420,304-8,423,679 | + | C1H3g02805 | CX3g031048 | LOC_Os03g17240 | Os03g0281000 | - | Detail |
| C2H3g01163 | 3:8,426,934-8,429,275 | + | C1H3g19384 | CX3g028226 | LOC_Os03g17250 | Os03g0281100 | - | Detail |
| C2H3g30239 | 3:8,433,479-8,434,423 | - | C1H3g05247 | CX3g026165 | LOC_Os03g17260 | Os03g0281201 | - | Detail |
| C2H3g10844 | 3:8,435,961-8,444,241 | - | C1H3g09869 | CX3g025004 | LOC_Os03g17270 | Os03g0281300 | - | Detail |
| C2H3g22572 | 3:8,445,096-8,447,903 | - | C1H3g20489 | CX3g030681 | LOC_Os03g14100 | Os03g0378500 | Os2R_MYB37 | Detail |
| C2H3g23238 | 3:8,455,311-8,457,977 | + | C1H3g05953 | CX3g030928 | LOC_Os03g17300 | Os03g0281500 | OsCrRLK1L7 | Detail |
| C2H3g13223 | 3:8,458,066-8,464,430 | - | C1H3g23808 | CX3g030523 | LOC_Os03g17310 | Os03g0281600 | OsECA1 | Detail |
| C2H3g28841 | 3:8,469,216-8,473,827 | - | C1H3g08368 | CX3g026907 | LOC_Os03g17340 | Os03g0281800 | - | Detail |
| C2H3g02883 | 3:8,476,487-8,478,850 | + | C1H3g04312 | CX3g027101 | LOC_Os03g17350 | Os03g0281900 | ABCG5, OsABCG5, RCN1/OsABCG5 | Detail |
| C2H3g04384 | 3:8,484,137-8,486,437 | + | C1H3g07058 | CX3g025177 | LOC_Os03g17370 | Os03g0281900 | ABCG5, OsABCG5, RCN1/OsABCG5 | Detail |
| C2H3g12323 | 3:8,495,135-8,500,989 | - | - | - | - | - | - | Detail |
| C2H3g12675 | 3:8,515,622-8,516,839 | + | C1H3g15208 | CX3g027572 | LOC_Os03g17432 | Os03g0282700 | - | Detail |
| C2H3g17220 | 3:8,517,221-8,519,724 | - | C1H3g13015 | CX3g026586 | LOC_Os03g17440 | Os03g0282800 | - | Detail |
| C2H3g11550 | 3:8,520,256-8,523,120 | + | C1H3g25350 | CX3g027144 | LOC_Os03g17450 | Os03g0282900 | - | Detail |
| C2H3g03924 | 3:8,524,219-8,525,364 | - | C1H3g12499 | - | LOC_Os03g17460 | Os03g0283000 | - | Detail |
| C2H3g06812 | 3:8,526,764-8,529,124 | - | C1H3g12499 | CX3g029922 | LOC_Os03g17470 | Os03g0283100 | - | Detail |
| C2H3g13775 | 3:8,532,126-8,534,265 | - | C1H3g26286 | CX3g029922 | LOC_Os03g17480 | Os03g0283200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |