| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g12084 | 3:3,779,736-3,782,943 | - | C2H3g02721 | CX3g026547 | LOC_Os03g08450 | Os03g0182700 | - | Detail |
| C1H3g13610 | 3:3,784,188-3,786,284 | - | C2H3g09094 | CX3g030128 | LOC_Os03g08460 | Os03g0182800 | OsEBP89 | Detail |
| C1H3g04941 | 3:3,789,437-3,791,231 | - | C2H3g06008 | CX3g031280 | LOC_Os03g08470 | Os03g0183000 | - | Detail |
| C1H3g08056 | 3:3,797,172-3,802,194 | - | C2H3g02534 | - | LOC_Os03g08480 | Os03g0183100 | - | Detail |
| C1H3g18658 | 3:3,805,932-3,806,924 | - | C2H3g29975 | CX3g030128 | LOC_Os03g08490 | Os03g0183200 | - | Detail |
| C1H3g12179 | 3:3,812,565-3,813,548 | - | C2H3g00824 | CX3g030128 | LOC_Os03g08500 | Os03g0183300 | - | Detail |
| C1H3g30663 | 3:3,819,829-3,820,478 | - | C2H3g15819 | CX3g025492 | LOC_Os03g08520 | Os03g0183500 | OsFLZ10 | Detail |
| C1H3g23856 | 3:3,825,399-3,829,119 | - | C2H3g03642 | CX3g025720 | LOC_Os03g08530 | Os03g0183600 | - | Detail |
| C1H3g10815 | 3:3,832,544-3,833,347 | + | C2H3g13760 | CX3g029852 | LOC_Os03g08540 | - | - | Detail |
| C1H3g04182 | 3:3,836,467-3,842,289 | + | C2H3g04585 | CX3g027473 | LOC_Os03g08550 | Os03g0183800 | - | Detail |
| C1H3g04928 | 3:3,842,419-3,847,540 | - | C2H3g01686 | CX3g025762 | LOC_Os03g08560 | Os03g0183900 | - | Detail |
| C1H3g17401 | 3:3,848,469-3,854,711 | + | C2H3g25647 | CX3g029574 | LOC_Os03g08570 | Os03g0184000 | OsPDS | Detail |
| C1H3g08309 | 3:3,857,455-3,859,933 | + | C2H3g01940 | CX3g027873 | LOC_Os03g08580 | Os03g0184100 | - | Detail |
| C1H3g03640 | 3:3,868,091-3,873,683 | + | C2H3g15817 | CX3g027355 | LOC_Os03g08600 | Os03g0184300 | - | Detail |
| C1H3g13079 | 3:3,878,027-3,880,825 | + | C2H3g27030 | CX3g026692 | LOC_Os03g08610 | Os03g0184400 | - | Detail |
| C1H3g25725 | 3:3,881,446-3,883,046 | - | C2H3g00042 | CX3g031066 | LOC_Os03g08620 | Os03g0184500 | - | Detail |
| C1H3g19327 | 3:3,884,455-3,886,321 | + | C2H3g00164 | CX3g030436 | LOC_Os03g08624 | Os03g0184550 | - | Detail |
| C1H3g17870 | 3:3,890,192-3,892,381 | + | C2H3g00164 | CX3g025220 | LOC_Os03g08630 | Os03g0184600 | - | Detail |
| C1H3g06804 | 3:3,892,956-3,894,987 | - | C2H3g20986 | CX3g028169 | LOC_Os03g08640 | Os03g0184700 | OsORC2 | Detail |
| C1H3g20941 | 3:3,896,250-3,897,694 | - | - | CX3g031060 | - | Os04g0581502 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g16452 | 3:33,046,539-33,047,911 | - | C1H3g04119 | CX3g031284 | LOC_Os03g64340 | Os03g0861400 | - | Detail |
| C2H3g12472 | 3:33,054,436-33,059,715 | - | C1H3g17429 | CX3g030656 | LOC_Os03g64350 | Os03g0861700 | - | Detail |
| C2H3g08959 | 3:33,059,879-33,062,631 | + | C1H3g24824 | CX3g028909 | LOC_Os03g64360 | Os03g0861800 | - | Detail |
| C2H3g16629 | 3:33,072,868-33,079,793 | + | C1H3g08341 | CX3g029193 | LOC_Os03g64400 | Os03g0862100 | - | Detail |
| C2H3g28738 | 3:33,082,826-33,084,731 | - | - | CX3g027325 | LOC_Os03g64415 | - | - | Detail |
| C2H4g04859 | 4:3,816-6,198 | + | C1H6g20714 | CX6g041752 | LOC_Os06g01840 | Os06g0107600 | - | Detail |
| C2H4g12961 | 4:6,554-8,915 | - | C1H6g26100 | CX6g042457 | LOC_Os06g01850 | Os06g0107700 | OsLFNR2, LFNR2, FNR | Detail |
| C2H4g04026 | 4:11,903-12,487 | - | - | CX6g041557 | LOC_Os06g01860 | Os06g0107800 | BPH29 | Detail |
| C2H4g21175 | 4:18,091-18,357 | + | C1H6g12285 | CX6g042594 | LOC_Os06g01890 | Os06g0108500 | - | Detail |
| C2H4g10486 | 4:20,285-22,820 | + | C1H6g01350 | CX6g042594 | LOC_Os06g01890 | Os06g0108500 | - | Detail |
| C2H4g22338 | 4:23,536-24,372 | - | - | CX6g042160 | LOC_Os06g01920 | Os06g0108600 | - | Detail |
| C2H4g13792 | 4:35,633-38,645 | + | C1H6g04390 | CX6g043309 | LOC_Os06g01934 | - | - | Detail |
| C2H4g26823 | 4:39,446-40,543 | - | - | CX6g041477 | LOC_Os06g01950 | Os06g0109000 | - | Detail |
| C2H4g18764 | 4:42,224-42,691 | - | - | CX6g041174 | LOC_Os06g01960 | Os06g0109100 | - | Detail |
| C2H4g20581 | 4:50,539-52,867 | - | C1H4g20758 | - | - | - | - | Detail |
| C2H4g20979 | 4:57,481-57,976 | - | C1H4g13734 | CX4g036368 | - | - | - | Detail |
| C2H4g12191 | 4:104,764-106,551 | - | C1H4g16035 | - | - | - | - | Detail |
| C2H4g13233 | 4:105,552-108,242 | + | C1H4g00861 | CX4g032894 | LOC_Os04g01070 | Os04g0100300 | - | Detail |
| C2H4g05647 | 4:152,099-161,042 | + | C1H4g00970 | CX4g034809 | LOC_Os04g01130 | Os04g0101300 | - | Detail |
| C2H4g16448 | 4:162,988-164,816 | - | C1H4g04170 | CX4g034027 | LOC_Os04g01140 | Os04g0101400 | CYP93G1, OsCYP93G1, OsFNSII, FNSII | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |