| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g20366 | 3:3,630,664-3,635,758 | + | C2H3g08147 | CX3g028669 | LOC_Os03g08170 | Os03g0179400 | RLCK103, GUDK, OsRLCK103 | Detail |
| C1H3g12127 | 3:3,638,891-3,639,716 | - | C2H3g15441 | CX3g028526 | LOC_Os03g08200 | Os03g0179700 | - | Detail |
| C1H3g24405 | 3:3,643,365-3,649,766 | + | C2H3g12971 | CX3g028986 | LOC_Os03g08220 | Os03g0179900 | - | Detail |
| C1H3g02343 | 3:3,651,319-3,653,238 | - | C2H3g00189 | CX3g028266 | LOC_Os03g08230 | Os03g0180000 | - | Detail |
| C1H3g14063 | 3:3,657,034-3,657,459 | - | C2H3g00572 | CX3g030311 | LOC_Os03g08250 | Os03g0180100 | - | Detail |
| C1H3g29143 | 3:3,660,290-3,667,076 | + | C2H3g21163 | CX3g029641 | LOC_Os03g08270 | Os03g0180300 | - | Detail |
| C1H3g14724 | 3:3,667,388-3,669,811 | - | C2H3g26539 | CX3g028474 | LOC_Os03g08280 | Os03g0180400 | OsPAA1 | Detail |
| C1H3g22681 | 3:3,677,704-3,678,661 | + | C2H3g28919 | CX3g030332 | LOC_Os03g08290 | Os03g0180600 | - | Detail |
| C1H3g16812 | 3:3,678,840-3,684,000 | - | C2H3g14443 | - | - | - | - | Detail |
| C1H3g29454 | 3:3,688,899-3,689,435 | - | C2H3g02101 | CX3g028990 | LOC_Os03g08310 | Os03g0180800 | TIFY11A, OsJAZ3, OsJAZ 9, OsJAZ9, OsTIFY11a, JAZ9 | Detail |
| C1H3g20655 | 3:3,693,105-3,694,467 | + | C2H3g09847 | CX3g028324 | LOC_Os03g08320 | Os03g0180900 | OsJAZ11 | Detail |
| C1H3g10433 | 3:3,701,038-3,701,598 | + | C2H3g19227 | CX3g026192 | LOC_Os03g08330 | Os03g0181100 | - | Detail |
| C1H3g18608 | 3:3,711,839-3,715,546 | + | C2H3g22563 | CX3g025929 | LOC_Os03g08350 | Os03g0181400 | - | Detail |
| C1H3g16121 | 3:3,717,757-3,721,734 | + | C2H3g27023 | CX3g029590 | LOC_Os03g08360 | Os03g0181500 | ONI1, OsCUT4 | Detail |
| C1H3g01704 | 3:3,724,277-3,728,741 | + | C2H3g06913 | CX3g030922 | LOC_Os03g08370 | Os03g0181600 | - | Detail |
| C1H3g27694 | 3:3,730,211-3,735,825 | + | C2H3g27575 | CX3g030111 | LOC_Os03g08380 | Os03g0181750 | - | Detail |
| C1H3g16917 | 3:3,738,383-3,742,754 | + | C2H3g19710 | CX3g028124 | LOC_Os03g08390 | Os03g0181800 | - | Detail |
| C1H3g01314 | 3:3,753,645-3,756,678 | + | C2H3g29238 | CX3g030065 | LOC_Os03g08410 | Os03g0182000 | - | Detail |
| C1H3g08820 | 3:3,768,582-3,776,410 | + | C2H3g25409 | CX3g030112 | LOC_Os03g08430 | Os03g0182400 | - | Detail |
| C1H3g11862 | 3:3,777,072-3,779,226 | - | C2H3g18979 | CX3g027156 | LOC_Os03g08440 | Os03g0182600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g00179 | 1:21,598,278-21,606,176 | - | C1H1g16733 | CX1g006178 | LOC_Os01g42410 | Os01g0609900 | - | Detail |
| C2H1g12978 | 1:21,620,497-21,622,985 | + | C1H1g07824 | CX1g000446 | LOC_Os01g42430 | Os01g0610100 | - | Detail |
| C2H1g15549 | 1:21,628,765-21,633,829 | + | C1H1g31299 | CX1g000122 | LOC_Os01g42460 | Os01g0610300 | OsASI1, OsIBM2 | Detail |
| C2H1g30233 | 1:21,636,451-21,639,228 | + | C1H1g17082 | CX1g001787 | LOC_Os01g42470 | Os01g0610400 | - | Detail |
| C2H1g01156 | 1:21,641,894-21,644,853 | - | C1H1g00950 | CX1g004113 | LOC_Os01g42480 | Os01g0610500 | - | Detail |
| C2H1g27976 | 1:21,648,205-21,655,957 | - | C1H1g10040 | CX1g006192 | LOC_Os01g42490 | Os01g0610600 | - | Detail |
| C2H1g11351 | 1:21,656,864-21,659,838 | - | C1H1g07937 | CX1g001957 | LOC_Os01g42500 | Os01g0610700 | - | Detail |
| C2H1g18697 | 1:21,662,265-21,665,341 | - | C1H1g20514 | CX1g001059 | LOC_Os01g42510 | Os01g0610800 | - | Detail |
| C2H1g27995 | 1:21,677,207-21,680,781 | + | C1H1g18308 | CX1g003691 | LOC_Os01g42520 | Os01g0611000 | - | Detail |
| C2H1g28850 | 1:21,683,507-21,685,671 | + | C1H1g31223 | CX1g007042 | LOC_Os01g47730 | Os01g0611100 | OsRAN1 | Detail |
| C2H1g16163 | 1:21,687,431-21,688,806 | - | C1H1g01107 | CX1g000611 | LOC_Os01g42540 | - | - | Detail |
| C2H1g18921 | 1:21,697,889-21,698,371 | + | - | CX1g002511 | LOC_Os01g42610 | - | - | Detail |
| C2H1g24169 | 1:21,701,206-21,702,308 | + | C1H1g13509 | CX1g002511 | LOC_Os01g42610 | Os01g0337100 | OsTPS1 | Detail |
| C2H1g29383 | 1:21,706,090-21,708,507 | - | C1H1g26944 | CX1g003287 | LOC_Os01g42620 | Os01g0611900 | - | Detail |
| C2H1g14636 | 1:21,709,333-21,712,785 | - | C1H1g21989 | CX1g005532 | LOC_Os01g42630 | Os01g0612000 | - | Detail |
| C2H1g23201 | 1:21,717,259-21,721,261 | + | C1H1g24195 | CX1g005764 | LOC_Os01g42650 | Os01g0612200 | - | Detail |
| C2H1g08682 | 1:21,739,093-21,743,240 | + | C1H1g12693 | CX1g006516 | LOC_Os01g42690 | Os01g0612500 | - | Detail |
| C2H1g14970 | 1:21,746,861-21,748,749 | - | - | CX1g005996 | LOC_Os01g42700 | Os01g0612600 | SIDP361 | Detail |
| C2H1g20504 | 1:21,754,606-21,761,660 | + | C1H1g19005 | CX1g005902 | LOC_Os01g42710 | Os01g0612700 | LOL2, OsLOL2, OsLOL5 | Detail |
| C2H1g10217 | 1:21,762,667-21,763,179 | + | C1H1g28272 | CX1g003214 | LOC_Os01g42720 | Os01g0612800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |