| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g20366 | 3:3,630,664-3,635,758 | + | C2H3g08147 | CX3g028669 | LOC_Os03g08170 | Os03g0179400 | RLCK103, GUDK, OsRLCK103 | Detail |
| C1H3g12127 | 3:3,638,891-3,639,716 | - | C2H3g15441 | CX3g028526 | LOC_Os03g08200 | Os03g0179700 | - | Detail |
| C1H3g24405 | 3:3,643,365-3,649,766 | + | C2H3g12971 | CX3g028986 | LOC_Os03g08220 | Os03g0179900 | - | Detail |
| C1H3g02343 | 3:3,651,319-3,653,238 | - | C2H3g00189 | CX3g028266 | LOC_Os03g08230 | Os03g0180000 | - | Detail |
| C1H3g14063 | 3:3,657,034-3,657,459 | - | C2H3g00572 | CX3g030311 | LOC_Os03g08250 | Os03g0180100 | - | Detail |
| C1H3g29143 | 3:3,660,290-3,667,076 | + | C2H3g21163 | CX3g029641 | LOC_Os03g08270 | Os03g0180300 | - | Detail |
| C1H3g14724 | 3:3,667,388-3,669,811 | - | C2H3g26539 | CX3g028474 | LOC_Os03g08280 | Os03g0180400 | OsPAA1 | Detail |
| C1H3g22681 | 3:3,677,704-3,678,661 | + | C2H3g28919 | CX3g030332 | LOC_Os03g08290 | Os03g0180600 | - | Detail |
| C1H3g16812 | 3:3,678,840-3,684,000 | - | C2H3g14443 | - | - | - | - | Detail |
| C1H3g29454 | 3:3,688,899-3,689,435 | - | C2H3g02101 | CX3g028990 | LOC_Os03g08310 | Os03g0180800 | TIFY11A, OsJAZ3, OsJAZ 9, OsJAZ9, OsTIFY11a, JAZ9 | Detail |
| C1H3g20655 | 3:3,693,105-3,694,467 | + | C2H3g09847 | CX3g028324 | LOC_Os03g08320 | Os03g0180900 | OsJAZ11 | Detail |
| C1H3g10433 | 3:3,701,038-3,701,598 | + | C2H3g19227 | CX3g026192 | LOC_Os03g08330 | Os03g0181100 | - | Detail |
| C1H3g18608 | 3:3,711,839-3,715,546 | + | C2H3g22563 | CX3g025929 | LOC_Os03g08350 | Os03g0181400 | - | Detail |
| C1H3g16121 | 3:3,717,757-3,721,734 | + | C2H3g27023 | CX3g029590 | LOC_Os03g08360 | Os03g0181500 | ONI1, OsCUT4 | Detail |
| C1H3g01704 | 3:3,724,277-3,728,741 | + | C2H3g06913 | CX3g030922 | LOC_Os03g08370 | Os03g0181600 | - | Detail |
| C1H3g27694 | 3:3,730,211-3,735,825 | + | C2H3g27575 | CX3g030111 | LOC_Os03g08380 | Os03g0181750 | - | Detail |
| C1H3g16917 | 3:3,738,383-3,742,754 | + | C2H3g19710 | CX3g028124 | LOC_Os03g08390 | Os03g0181800 | - | Detail |
| C1H3g01314 | 3:3,753,645-3,756,678 | + | C2H3g29238 | CX3g030065 | LOC_Os03g08410 | Os03g0182000 | - | Detail |
| C1H3g08820 | 3:3,768,582-3,776,410 | + | C2H3g25409 | CX3g030112 | LOC_Os03g08430 | Os03g0182400 | - | Detail |
| C1H3g11862 | 3:3,777,072-3,779,226 | - | C2H3g18979 | CX3g027156 | LOC_Os03g08440 | Os03g0182600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g19190 | 3:25,554,570-25,561,711 | + | C1H3g13231 | CX3g031047 | LOC_Os03g59910 | Os03g0565900 | - | Detail |
| C2H3g17803 | 3:25,570,498-25,573,219 | + | C1H3g02064 | CX3g029768 | LOC_Os03g49050 | Os03g0109300 | - | Detail |
| C2H3g15504 | 3:25,581,060-25,584,596 | + | C1H3g16785 | CX3g028722 | LOC_Os03g49126 | Os03g0697833 | - | Detail |
| C2H3g27379 | 3:25,587,707-25,592,889 | - | C1H3g27645 | CX3g029661 | LOC_Os03g49140 | Os03g0698350 | - | Detail |
| C2H3g22127 | 3:25,599,797-25,603,130 | - | C1H3g05637 | CX1g002153 | LOC_Os03g63870 | Os03g0429900 | - | Detail |
| C2H3g20960 | 3:25,616,219-25,619,400 | + | C1H3g28768 | CX3g030702 | LOC_Os03g49150 | Os03g0698500 | - | Detail |
| C2H3g00073 | 3:25,627,418-25,631,109 | + | C1H3g04379 | CX3g025989 | LOC_Os03g49170 | Os03g0698800 | - | Detail |
| C2H3g03385 | 3:25,632,477-25,636,312 | - | C1H3g08733 | CX3g029194 | LOC_Os03g49180 | Os03g0698900 | - | Detail |
| C2H3g06339 | 3:25,639,724-25,644,239 | - | C1H3g14380 | CX3g027765 | LOC_Os03g49200 | Os03g0699100 | - | Detail |
| C2H3g19400 | 3:25,647,107-25,653,178 | + | C1H3g06128 | CX3g025779 | LOC_Os03g49210 | Os03g0699200 | - | Detail |
| C2H3g05406 | 3:25,653,677-25,656,852 | + | C1H3g23737 | CX3g029958 | LOC_Os03g49220 | Os03g0699300 | - | Detail |
| C2H3g18347 | 3:25,657,907-25,660,725 | - | C1H3g16011 | CX3g028209 | LOC_Os03g49230 | Os03g0699400 | - | Detail |
| C2H3g00103 | 3:25,661,782-25,664,015 | + | C1H3g30535 | CX3g029586 | LOC_Os03g49250 | Os03g0699600 | - | Detail |
| C2H3g17436 | 3:25,665,813-25,669,803 | + | C1H3g05707 | CX3g027914 | LOC_Os03g49260 | Os03g0699700 | Osr9-LOX1 | Detail |
| C2H3g05028 | 3:25,695,027-25,700,308 | + | C1H3g00070 | CX3g026782 | LOC_Os03g49350 | Os03g0700400 | LOX-3 | Detail |
| C2H3g00658 | 3:25,714,832-25,721,118 | + | C1H3g28644 | CX3g026204 | LOC_Os03g49380 | Os03g0700700 | - | Detail |
| C2H3g05258 | 3:25,724,525-25,732,125 | + | C1H3g00971 | CX3g025372 | LOC_Os03g49400 | Os03g0700800 | - | Detail |
| C2H3g25047 | 3:25,736,986-25,745,311 | + | C1H3g06905 | CX3g029939 | LOC_Os03g49420 | Os03g0701000 | - | Detail |
| C2H3g16404 | 3:25,747,030-25,749,728 | - | C1H3g16586 | CX3g025036 | LOC_Os03g49430 | Os03g0701100 | - | Detail |
| C2H3g29777 | 3:25,750,626-25,753,803 | + | C1H3g02438 | CX3g031052 | LOC_Os03g49440 | Os03g0701200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |