| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g20366 | 3:3,630,664-3,635,758 | + | C2H3g08147 | CX3g028669 | LOC_Os03g08170 | Os03g0179400 | RLCK103, GUDK, OsRLCK103 | Detail |
| C1H3g12127 | 3:3,638,891-3,639,716 | - | C2H3g15441 | CX3g028526 | LOC_Os03g08200 | Os03g0179700 | - | Detail |
| C1H3g24405 | 3:3,643,365-3,649,766 | + | C2H3g12971 | CX3g028986 | LOC_Os03g08220 | Os03g0179900 | - | Detail |
| C1H3g02343 | 3:3,651,319-3,653,238 | - | C2H3g00189 | CX3g028266 | LOC_Os03g08230 | Os03g0180000 | - | Detail |
| C1H3g14063 | 3:3,657,034-3,657,459 | - | C2H3g00572 | CX3g030311 | LOC_Os03g08250 | Os03g0180100 | - | Detail |
| C1H3g29143 | 3:3,660,290-3,667,076 | + | C2H3g21163 | CX3g029641 | LOC_Os03g08270 | Os03g0180300 | - | Detail |
| C1H3g14724 | 3:3,667,388-3,669,811 | - | C2H3g26539 | CX3g028474 | LOC_Os03g08280 | Os03g0180400 | OsPAA1 | Detail |
| C1H3g22681 | 3:3,677,704-3,678,661 | + | C2H3g28919 | CX3g030332 | LOC_Os03g08290 | Os03g0180600 | - | Detail |
| C1H3g16812 | 3:3,678,840-3,684,000 | - | C2H3g14443 | - | - | - | - | Detail |
| C1H3g29454 | 3:3,688,899-3,689,435 | - | C2H3g02101 | CX3g028990 | LOC_Os03g08310 | Os03g0180800 | TIFY11A, OsJAZ3, OsJAZ 9, OsJAZ9, OsTIFY11a, JAZ9 | Detail |
| C1H3g20655 | 3:3,693,105-3,694,467 | + | C2H3g09847 | CX3g028324 | LOC_Os03g08320 | Os03g0180900 | OsJAZ11 | Detail |
| C1H3g10433 | 3:3,701,038-3,701,598 | + | C2H3g19227 | CX3g026192 | LOC_Os03g08330 | Os03g0181100 | - | Detail |
| C1H3g18608 | 3:3,711,839-3,715,546 | + | C2H3g22563 | CX3g025929 | LOC_Os03g08350 | Os03g0181400 | - | Detail |
| C1H3g16121 | 3:3,717,757-3,721,734 | + | C2H3g27023 | CX3g029590 | LOC_Os03g08360 | Os03g0181500 | ONI1, OsCUT4 | Detail |
| C1H3g01704 | 3:3,724,277-3,728,741 | + | C2H3g06913 | CX3g030922 | LOC_Os03g08370 | Os03g0181600 | - | Detail |
| C1H3g27694 | 3:3,730,211-3,735,825 | + | C2H3g27575 | CX3g030111 | LOC_Os03g08380 | Os03g0181750 | - | Detail |
| C1H3g16917 | 3:3,738,383-3,742,754 | + | C2H3g19710 | CX3g028124 | LOC_Os03g08390 | Os03g0181800 | - | Detail |
| C1H3g01314 | 3:3,753,645-3,756,678 | + | C2H3g29238 | CX3g030065 | LOC_Os03g08410 | Os03g0182000 | - | Detail |
| C1H3g08820 | 3:3,768,582-3,776,410 | + | C2H3g25409 | CX3g030112 | LOC_Os03g08430 | Os03g0182400 | - | Detail |
| C1H3g11862 | 3:3,777,072-3,779,226 | - | C2H3g18979 | CX3g027156 | LOC_Os03g08440 | Os03g0182600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g07422 | 5:22,642,574-22,644,790 | - | C1H5g30870 | CX5g038064 | LOC_Os05g46690 | Os05g0544600 | - | Detail |
| C2H5g03355 | 5:22,648,184-22,650,047 | - | C1H5g10393 | CX5g038009 | LOC_Os05g46710 | Os05g0544900 | - | Detail |
| C2H5g19788 | 5:22,654,646-22,659,830 | + | C1H5g19841 | CX5g039949 | LOC_Os05g46720 | Os05g0545000 | - | Detail |
| C2H5g01084 | 5:22,665,060-22,675,567 | - | C1H5g28488 | CX5g039251 | LOC_Os05g46740 | Os05g0545300 | - | Detail |
| C2H5g27152 | 5:22,681,596-22,682,909 | - | C1H5g07171 | CX5g040715 | LOC_Os05g46760 | Os05g0545400 | - | Detail |
| C2H5g05544 | 5:22,686,480-22,691,402 | + | - | - | - | - | - | Detail |
| C2H5g06020 | 5:22,696,950-22,702,172 | + | C1H5g28842 | CX5g040995 | LOC_Os05g46860 | Os05g0545600 | - | Detail |
| C2H5g12310 | 5:22,706,543-22,707,058 | + | C1H5g11625 | CX5g038306 | LOC_Os05g46790 | Os05g0546400 | - | Detail |
| C2H5g18437 | 5:22,708,692-22,710,601 | + | C1H5g30534 | CX5g039852 | LOC_Os05g46800 | Os05g0545900 | - | Detail |
| C2H5g16888 | 5:22,715,981-22,716,661 | + | C1H5g01044 | CX5g040967 | LOC_Os05g46830 | Os05g0546300 | - | Detail |
| C2H5g27430 | 5:22,719,194-22,719,894 | - | - | CX5g039150 | - | - | - | Detail |
| C2H5g26619 | 5:22,722,084-22,722,893 | + | C1H5g21422 | CX5g038306 | LOC_Os05g46840 | Os05g0546400 | - | Detail |
| C2H5g22705 | 5:22,724,763-22,726,511 | - | C1H5g08788 | CX5g037119 | LOC_Os05g47446 | Os05g0547850 | OsPDCD5 | Detail |
| C2H5g02769 | 5:22,732,142-22,732,777 | + | C1H5g20241 | CX5g036931 | LOC_Os05g47470 | Os05g0548100 | - | Detail |
| C2H5g11129 | 5:22,735,303-22,736,253 | - | C1H5g30022 | CX5g038940 | LOC_Os05g47480 | Os05g0548200 | - | Detail |
| C2H5g21680 | 5:22,738,159-22,744,169 | + | C1H5g19984 | CX5g039873 | LOC_Os05g47490 | Os05g0548300 | - | Detail |
| C2H5g06103 | 5:22,746,540-22,753,216 | + | C1H5g17282 | CX5g036974 | LOC_Os05g47500 | Os05g0548500 | - | Detail |
| C2H5g19664 | 5:22,753,521-22,754,855 | + | C1H5g08583 | CX5g038468 | LOC_Os05g47510 | Os05g0548600 | qGSN5 | Detail |
| C2H5g21416 | 5:22,755,411-22,757,608 | - | C1H5g05315 | CX5g040999 | LOC_Os05g47530 | Os05g0548800 | - | Detail |
| C2H5g15278 | 5:22,758,416-22,762,952 | - | C1H5g25644 | CX5g037857 | LOC_Os05g47545 | Os05g0548900 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |