| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g31714 | 3:3,524,674-3,527,364 | - | C2H3g07082 | CX3g025943 | LOC_Os03g19900 | Os03g0176300 | - | Detail |
| C1H3g29070 | 3:3,531,557-3,532,000 | + | - | CX3g029598 | LOC_Os03g07950 | Os03g0176500 | - | Detail |
| C1H3g15283 | 3:3,535,670-3,538,136 | - | C2H3g21895 | CX3g030266 | LOC_Os03g07960 | Os03g0176700 | - | Detail |
| C1H3g23456 | 3:3,539,632-3,543,426 | - | C2H3g00013 | CX3g029368 | LOC_Os03g07970 | Os03g0176800 | - | Detail |
| C1H3g29339 | 3:3,545,081-3,545,401 | - | C2H3g04928 | CX3g028066 | LOC_Os03g07980 | Os03g0176900 | - | Detail |
| C1H3g11831 | 3:3,547,433-3,550,737 | + | C2H3g13522 | CX3g029737 | LOC_Os03g07990 | Os03g0177000 | - | Detail |
| C1H3g26527 | 3:3,551,746-3,555,617 | + | C2H3g03958 | CX3g030435 | LOC_Os03g08000 | Os03g0177300 | - | Detail |
| C1H3g16670 | 3:3,556,288-3,559,286 | + | C2H3g29734 | CX3g025284 | LOC_Os03g08050 | Os03g0177900 | - | Detail |
| C1H3g02996 | 3:3,562,431-3,564,801 | + | C2H3g13691 | CX3g028070 | LOC_Os03g08050 | Os03g0177500 | OsEF1A | Detail |
| C1H3g00802 | 3:3,571,950-3,575,270 | + | C2H3g13691 | CX3g028070 | LOC_Os03g08050 | Os03g0177400 | - | Detail |
| C1H3g04475 | 3:3,578,437-3,581,379 | + | C2H3g13691 | CX3g025284 | LOC_Os03g08010 | Os03g0177500 | OsEF1A | Detail |
| C1H3g20350 | 3:3,581,457-3,588,568 | - | C2H3g00449 | CX3g028367 | LOC_Os03g08070 | Os03g0178100 | - | Detail |
| C1H3g15649 | 3:3,591,581-3,593,353 | + | C2H3g25180 | CX3g027428 | LOC_Os03g08080 | Os03g0178200 | - | Detail |
| C1H3g27650 | 3:3,593,500-3,594,715 | - | C2H3g26133 | CX3g029291 | LOC_Os03g08090 | Os03g0178300 | - | Detail |
| C1H3g28165 | 3:3,595,771-3,598,977 | - | C2H3g08383 | CX3g026682 | LOC_Os03g08100 | Os03g0178400 | - | Detail |
| C1H3g16865 | 3:3,600,829-3,605,538 | - | C2H3g20309 | CX3g026682 | LOC_Os03g08110 | Os03g0178500 | - | Detail |
| C1H3g20528 | 3:3,609,374-3,616,052 | + | C2H3g04420 | CX3g027590 | LOC_Os03g08140 | Os03g0179000 | OsTTLL12 | Detail |
| C1H3g07823 | 3:3,616,375-3,617,052 | + | C2H3g12070 | CX3g025130 | LOC_Os03g08150 | Os03g0179100 | - | Detail |
| C1H3g18493 | 3:3,617,875-3,619,387 | + | C2H3g20817 | CX3g029368 | LOC_Os03g07750 | Os03g0179200 | - | Detail |
| C1H3g14467 | 3:3,619,519-3,620,575 | + | C2H3g00013 | CX3g029368 | LOC_Os03g07970 | Os03g0176800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H11g05219 | 11:41,219-42,516 | - | C1H11g01849 | CX11g011920 | LOC_Os12g01030 | Os11g0100600 | - | Detail |
| C2H11g01700 | 11:44,241-46,005 | - | C1H11g20414 | CX11g013460 | - | - | - | Detail |
| C2H11g04368 | 11:60,985-67,081 | + | C1H11g21634 | CX11g011380 | LOC_Os12g01080 | Os11g0101200 | OsRpp30 | Detail |
| C2H11g10385 | 11:68,016-68,298 | + | C1H12g27411 | - | LOC_Os12g01090 | - | - | Detail |
| C2H11g28209 | 11:69,769-71,083 | + | C1H11g08822 | CX11g011380 | LOC_Os12g01100 | Os11g0101200 | OsRpp30 | Detail |
| C2H11g29422 | 11:95,272-95,883 | + | C1H11g18239 | CX11g010871 | LOC_Os12g01120 | Os11g0102100 | WOX3, OsWOX3, OsNS, OsPRS | Detail |
| C2H11g14954 | 11:106,826-121,261 | + | C1H11g15262 | CX11g013891 | LOC_Os12g01140 | Os11g0102200 | OsPHOT1a | Detail |
| C2H11g23847 | 11:121,531-122,942 | - | C1H11g26777 | CX11g011791 | - | - | - | Detail |
| C2H11g27510 | 11:126,434-129,177 | + | C1H11g17087 | CX12g018399 | LOC_Os12g01160 | Os11g0102500 | - | Detail |
| C2H11g08338 | 11:130,442-133,692 | + | C1H11g29895 | CX11g011515 | LOC_Os12g01170 | Os11g0102600 | - | Detail |
| C2H11g20080 | 11:133,730-137,687 | - | C1H11g00951 | CX11g014575 | LOC_Os12g01180 | Os11g0102700 | - | Detail |
| C2H11g17658 | 11:140,743-147,490 | + | C1H11g19879 | CX11g011926 | LOC_Os12g01190 | Os11g0102800 | OsRINGC2-1 | Detail |
| C2H11g14803 | 11:147,642-155,207 | - | C1H11g30247 | CX11g014886 | LOC_Os12g01200 | Os11g0102900 | - | Detail |
| C2H11g28258 | 11:163,432-168,490 | - | C1H11g15396 | CX11g014869 | LOC_Os12g01220 | Os11g0103100 | - | Detail |
| C2H11g11172 | 11:168,489-170,842 | + | C1H11g15479 | CX11g013052 | LOC_Os12g01230 | Os11g0103400 | - | Detail |
| C2H11g18705 | 11:173,249-175,700 | + | C1H11g30773 | CX11g014836 | LOC_Os11g01260 | Os11g0103550 | - | Detail |
| C2H11g08907 | 11:176,936-181,911 | - | C1H11g29788 | CX11g012146 | LOC_Os12g01240 | Os11g0103700 | - | Detail |
| C2H11g08625 | 11:187,464-191,198 | + | C1H11g28012 | CX11g014836 | LOC_Os12g01250 | Os11g0103800 | - | Detail |
| C2H11g06934 | 11:197,266-202,507 | + | C1H11g15195 | CX11g014082 | LOC_Os12g01350 | Os11g0104220 | - | Detail |
| C2H11g22963 | 11:216,142-221,333 | + | C1H11g27974 | CX11g011532 | LOC_Os12g01360 | Os11g0104300 | D53, D53(D K3), DK3, Dwf34 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |