| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g30733 | 3:3,265,574-3,267,124 | + | C2H3g06080 | CX3g027561 | LOC_Os03g07330 | Os03g0169300 | - | Detail |
| C1H3g17744 | 3:3,268,862-3,269,633 | - | C2H3g03131 | CX3g029153 | LOC_Os03g07340 | Os03g0169400 | - | Detail |
| C1H3g09565 | 3:3,269,930-3,274,546 | + | C2H3g06080 | CX3g030421 | LOC_Os03g07350 | Os03g0169500 | OsCSLA4 | Detail |
| C1H3g30713 | 3:3,279,687-3,282,410 | + | C2H3g15611 | CX3g029943 | LOC_Os03g07360 | Os03g0169600 | RDD4, OsDof12, Dof12, OsDof-12, OsCDF1, OsCDF1/OsDOF12, OsDOF12, CDF1, DOF12 | Detail |
| C1H3g07573 | 3:3,285,332-3,286,936 | - | C2H3g04475 | CX3g029455 | LOC_Os03g07370 | Os03g0169800 | WSL9 | Detail |
| C1H3g28123 | 3:3,288,651-3,290,857 | - | C2H3g13284 | CX3g026502 | LOC_Os03g07380 | Os03g0169900 | - | Detail |
| C1H3g30140 | 3:3,296,603-3,296,968 | - | C2H3g19051 | CX3g030142 | LOC_Os03g07400 | Os03g0170100 | - | Detail |
| C1H3g19291 | 3:3,300,332-3,303,968 | + | C2H3g20350 | CX3g026147 | LOC_Os03g07420 | Os03g0170300 | - | Detail |
| C1H3g10171 | 3:3,304,680-3,308,519 | - | C2H3g22587 | CX3g030033 | LOC_Os03g07430 | Os03g0170400 | OsRLCK102 | Detail |
| C1H3g24740 | 3:3,313,654-3,314,211 | - | C2H3g17639 | CX3g029150 | LOC_Os03g07440 | Os03g0170500 | - | Detail |
| C1H3g30202 | 3:3,320,822-3,323,552 | - | C2H3g04350 | CX3g026337 | LOC_Os03g07450 | Os03g0170600 | - | Detail |
| C1H3g13830 | 3:3,329,053-3,329,997 | + | C2H3g02647 | CX3g025444 | LOC_Os03g07470 | Os03g0170800 | - | Detail |
| C1H3g13288 | 3:3,332,199-3,338,105 | - | C2H3g25317 | CX3g025078 | LOC_Os03g07480 | Os03g0170900 | - | Detail |
| C1H3g19778 | 3:3,347,153-3,347,814 | - | C2H3g08560 | CX3g027135 | LOC_Os03g07510 | Os03g0171300 | PGL1, ILI6 | Detail |
| C1H3g11183 | 3:3,364,907-3,366,202 | + | C2H3g08984 | CX3g026056 | LOC_Os03g07530 | Os03g0171600 | - | Detail |
| C1H3g20949 | 3:3,376,558-3,377,120 | + | C2H3g13809 | CX3g031164 | LOC_Os03g07540 | Os03g0171700 | OsbHLH153 | Detail |
| C1H3g01760 | 3:3,385,229-3,389,074 | + | C2H3g25444 | CX3g025564 | LOC_Os03g07570 | Os03g0171900 | - | Detail |
| C1H3g16730 | 3:3,390,361-3,395,122 | + | C2H3g13937 | CX3g028125 | LOC_Os03g07580 | Os03g0172000 | - | Detail |
| C1H3g20330 | 3:3,399,164-3,399,409 | + | C2H3g23028 | CX3g030853 | LOC_Os03g07590 | Os03g0172100 | - | Detail |
| C1H3g07122 | 3:3,400,003-3,403,602 | - | C2H3g09147 | CX3g029415 | LOC_Os03g07600 | Os03g0172200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g14461 | 2:27,983,381-27,985,425 | - | C1H2g00972 | CX2g020051 | LOC_Os02g49880 | Os02g0731700 | OsK, Ghd2 | Detail |
| C2H2g05011 | 2:28,001,819-28,003,276 | + | C1H2g08007 | CX2g023216 | LOC_Os02g49920 | Os02g0731900 | OsCUT2 | Detail |
| C2H2g12585 | 2:28,009,364-28,013,958 | + | C1H2g22578 | CX2g022879 | LOC_Os02g49950 | Os02g0732200 | - | Detail |
| C2H2g26422 | 2:28,016,168-28,017,969 | + | C1H2g08019 | - | LOC_Os02g49960 | Os02g0732300 | - | Detail |
| C2H2g20922 | 2:28,025,782-28,026,672 | + | C1H2g28110 | CX2g019464 | LOC_Os02g49970 | Os02g0732400 | - | Detail |
| C2H2g17194 | 2:28,029,944-28,033,017 | - | C1H2g10850 | CX2g023132 | LOC_Os02g49980 | Os02g0732500 | - | Detail |
| C2H2g26612 | 2:28,036,294-28,037,331 | - | C1H2g05502 | CX2g021353 | LOC_Os02g49986 | Os02g0732600 | Os2R_MYB30 | Detail |
| C2H2g25135 | 2:28,038,484-28,050,004 | - | C1H2g24742 | CX2g020946 | LOC_Os02g49992 | Os02g0732700 | - | Detail |
| C2H2g26888 | 2:28,050,947-28,052,542 | - | C1H2g27424 | CX2g023389 | LOC_Os02g50000 | Os02g0732800 | - | Detail |
| C2H2g07391 | 2:28,053,843-28,057,196 | + | C1H2g26386 | CX2g020808 | LOC_Os02g50010 | Os02g0732900 | - | Detail |
| C2H2g23355 | 2:28,057,447-28,059,601 | - | C1H2g27002 | CX2g019891 | LOC_Os02g50020 | Os02g0733001 | - | Detail |
| C2H2g17859 | 2:28,065,683-28,068,761 | + | C1H2g31248 | CX2g019255 | LOC_Os02g50040 | Os02g0733300 | OsGH9B1 | Detail |
| C2H2g23239 | 2:28,069,133-28,069,789 | - | C1H2g05277 | CX2g024096 | LOC_Os02g50050 | Os02g0733400 | - | Detail |
| C2H2g09796 | 2:28,071,260-28,071,796 | - | C1H2g28250 | CX2g023041 | LOC_Os02g50060 | Os02g0733500 | - | Detail |
| C2H2g06681 | 2:28,073,838-28,074,380 | - | - | - | - | - | - | Detail |
| C2H2g29637 | 2:28,078,545-28,081,151 | + | C1H2g25545 | CX2g024530 | LOC_Os02g50100 | Os02g0733800 | - | Detail |
| C2H2g26091 | 2:28,081,751-28,081,993 | - | - | CX2g020845 | LOC_Os02g50110 | Os02g0733900 | OsSYL2 | Detail |
| C2H2g14181 | 2:28,100,291-28,100,920 | + | C1H2g09486 | CX2g019678 | LOC_Os02g50130 | Os02g0734300 | - | Detail |
| C2H2g24179 | 2:28,113,048-28,114,363 | + | C1H2g30933 | - | LOC_Os02g50140 | Os02g0734400 | - | Detail |
| C2H2g04511 | 2:28,118,219-28,120,246 | + | C1H2g30933 | - | LOC_Os02g50174 | Os02g0734500 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |