| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g13873 | 3:3,055,747-3,058,102 | - | C2H3g12377 | CX3g030325 | LOC_Os03g06890 | Os03g0164800 | - | Detail |
| C1H3g21506 | 3:3,060,235-3,060,681 | + | C2H3g23822 | CX3g029502 | - | Os03g0164901 | - | Detail |
| C1H3g29883 | 3:3,064,309-3,074,566 | - | C2H3g07393 | CX3g026349 | LOC_Os03g06900 | Os03g0165000 | TOP3α | Detail |
| C1H3g17508 | 3:3,074,924-3,079,031 | - | C2H3g24120 | CX3g027841 | LOC_Os03g06910 | Os03g0165100 | - | Detail |
| C1H3g30143 | 3:3,079,689-3,081,251 | + | C2H3g16754 | - | LOC_Os03g06920 | - | - | Detail |
| C1H3g17985 | 3:3,081,610-3,087,726 | + | C2H3g12144 | CX3g027850 | LOC_Os03g06920 | Os03g0165266 | OsCHR730, CHR730 | Detail |
| C1H3g21677 | 3:3,088,619-3,090,688 | - | C2H3g20116 | CX3g028821 | LOC_Os03g06930 | Os03g0165300 | - | Detail |
| C1H3g31542 | 3:3,090,808-3,092,668 | - | C2H3g10784 | - | - | - | - | Detail |
| C1H3g17647 | 3:3,096,730-3,097,161 | + | C2H3g07914 | CX3g025536 | - | Os03g0165375 | - | Detail |
| C1H3g30263 | 3:3,100,263-3,106,732 | - | C2H3g24716 | CX3g028153 | LOC_Os03g06940 | Os03g0165400 | - | Detail |
| C1H3g12191 | 3:3,114,985-3,126,106 | - | C2H3g14394 | CX3g027771 | LOC_Os03g06950 | Os03g0165600 | - | Detail |
| C1H3g13896 | 3:3,127,649-3,129,733 | + | C2H3g15746 | CX3g030842 | LOC_Os03g06960 | Os03g0165800 | - | Detail |
| C1H3g22228 | 3:3,131,396-3,134,167 | - | C2H3g22818 | CX3g028104 | LOC_Os03g06970 | Os03g0165900 | - | Detail |
| C1H3g16704 | 3:3,134,464-3,134,784 | - | C2H3g18146 | - | - | - | - | Detail |
| C1H3g06157 | 3:3,137,781-3,141,091 | - | C2H3g11279 | CX3g026438 | LOC_Os03g06980 | Os03g0166000 | - | Detail |
| C1H3g11602 | 3:3,143,315-3,145,448 | + | C2H3g30212 | CX3g025523 | LOC_Os03g07000 | Os03g0166100 | - | Detail |
| C1H3g09271 | 3:3,146,171-3,148,053 | + | C2H3g23098 | CX3g027208 | LOC_Os03g07000 | Os03g0166200 | - | Detail |
| C1H3g01458 | 3:3,148,520-3,152,294 | - | C2H3g15876 | CX3g027399 | LOC_Os03g07060 | Os03g0166600 | - | Detail |
| C1H3g04033 | 3:3,159,274-3,164,955 | + | C2H3g12538 | CX3g030094 | LOC_Os03g07080 | Os03g0166800 | - | Detail |
| C1H3g18965 | 3:3,167,474-3,169,003 | + | C2H3g19555 | CX3g030196 | LOC_Os03g07100 | Os03g0167000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g06770 | 2:9,086,090-9,092,576 | - | C1H2g04839 | CX2g020121 | LOC_Os02g17460 | Os02g0274600 | - | Detail |
| C2H2g25557 | 2:9,094,416-9,095,481 | + | C1H2g13080 | - | - | - | - | Detail |
| C2H2g12255 | 2:9,097,550-9,100,200 | + | C1H2g13080 | CX2g019862 | LOC_Os02g17470 | Os02g0274700 | - | Detail |
| C2H2g07148 | 2:9,111,459-9,118,310 | + | C1H2g20851 | CX2g020679 | LOC_Os02g17500 | Os02g0274900 | - | Detail |
| C2H2g16988 | 2:9,123,672-9,124,927 | + | C1H2g27766 | CX2g021332 | LOC_Os02g17520 | Os02g0275100 | - | Detail |
| C2H2g25493 | 2:9,125,762-9,131,981 | - | C1H2g18414 | CX2g022654 | LOC_Os02g17534 | Os02g0275200 | - | Detail |
| C2H2g12406 | 2:9,138,853-9,140,072 | + | C1H2g18414 | CX2g022654 | LOC_Os02g17590 | - | - | Detail |
| C2H2g19414 | 2:9,144,370-9,146,293 | + | C1H2g18414 | CX2g022452 | LOC_Os02g17534 | Os02g0275200 | - | Detail |
| C2H2g11418 | 2:9,153,298-9,161,883 | - | C1H2g28570 | CX2g024094 | LOC_Os02g17620 | Os02g0276200 | - | Detail |
| C2H2g13253 | 2:9,188,438-9,191,184 | - | C1H2g09318 | CX2g019729 | LOC_Os02g17640 | Os02g0276400 | - | Detail |
| C2H2g02640 | 2:9,192,146-9,200,452 | - | C1H2g06211 | CX2g023106 | LOC_Os02g17650 | Os02g0276500 | OsVTE1 | Detail |
| C2H2g17601 | 2:9,224,532-9,226,293 | - | - | - | - | - | - | Detail |
| C2H2g21214 | 2:9,227,200-9,234,095 | - | C1H2g04949 | CX2g020993 | LOC_Os02g17680 | Os02g0276900 | - | Detail |
| C2H2g16961 | 2:9,244,502-9,246,511 | - | - | - | - | - | - | Detail |
| C2H2g07248 | 2:9,245,242-9,247,742 | + | C1H2g26261 | CX2g020060 | LOC_Os11g06800 | Os02g0231600 | - | Detail |
| C2H2g23233 | 2:9,251,488-9,256,684 | + | C1H2g06748 | CX2g023495 | LOC_Os02g17700 | Os02g0277600 | - | Detail |
| C2H2g21422 | 2:9,257,574-9,260,172 | - | C1H2g21417 | CX2g019451 | LOC_Os02g17710 | Os02g0277700 | - | Detail |
| C2H2g09294 | 2:9,267,786-9,272,819 | + | C1H2g04601 | CX2g022207 | LOC_Os02g17760 | Os02g0278400 | - | Detail |
| C2H2g18932 | 2:9,270,435-9,271,883 | - | - | - | - | Os02g0278450 | - | Detail |
| C2H2g03135 | 2:9,276,565-9,287,809 | - | C1H2g04831 | CX2g024821 | LOC_Os02g17780 | Os02g0278700 | OsCPS1, OsCPS1<sub>ent</sub> | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |