| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g13873 | 3:3,055,747-3,058,102 | - | C2H3g12377 | CX3g030325 | LOC_Os03g06890 | Os03g0164800 | - | Detail |
| C1H3g21506 | 3:3,060,235-3,060,681 | + | C2H3g23822 | CX3g029502 | - | Os03g0164901 | - | Detail |
| C1H3g29883 | 3:3,064,309-3,074,566 | - | C2H3g07393 | CX3g026349 | LOC_Os03g06900 | Os03g0165000 | TOP3α | Detail |
| C1H3g17508 | 3:3,074,924-3,079,031 | - | C2H3g24120 | CX3g027841 | LOC_Os03g06910 | Os03g0165100 | - | Detail |
| C1H3g30143 | 3:3,079,689-3,081,251 | + | C2H3g16754 | - | LOC_Os03g06920 | - | - | Detail |
| C1H3g17985 | 3:3,081,610-3,087,726 | + | C2H3g12144 | CX3g027850 | LOC_Os03g06920 | Os03g0165266 | OsCHR730, CHR730 | Detail |
| C1H3g21677 | 3:3,088,619-3,090,688 | - | C2H3g20116 | CX3g028821 | LOC_Os03g06930 | Os03g0165300 | - | Detail |
| C1H3g31542 | 3:3,090,808-3,092,668 | - | C2H3g10784 | - | - | - | - | Detail |
| C1H3g17647 | 3:3,096,730-3,097,161 | + | C2H3g07914 | CX3g025536 | - | Os03g0165375 | - | Detail |
| C1H3g30263 | 3:3,100,263-3,106,732 | - | C2H3g24716 | CX3g028153 | LOC_Os03g06940 | Os03g0165400 | - | Detail |
| C1H3g12191 | 3:3,114,985-3,126,106 | - | C2H3g14394 | CX3g027771 | LOC_Os03g06950 | Os03g0165600 | - | Detail |
| C1H3g13896 | 3:3,127,649-3,129,733 | + | C2H3g15746 | CX3g030842 | LOC_Os03g06960 | Os03g0165800 | - | Detail |
| C1H3g22228 | 3:3,131,396-3,134,167 | - | C2H3g22818 | CX3g028104 | LOC_Os03g06970 | Os03g0165900 | - | Detail |
| C1H3g16704 | 3:3,134,464-3,134,784 | - | C2H3g18146 | - | - | - | - | Detail |
| C1H3g06157 | 3:3,137,781-3,141,091 | - | C2H3g11279 | CX3g026438 | LOC_Os03g06980 | Os03g0166000 | - | Detail |
| C1H3g11602 | 3:3,143,315-3,145,448 | + | C2H3g30212 | CX3g025523 | LOC_Os03g07000 | Os03g0166100 | - | Detail |
| C1H3g09271 | 3:3,146,171-3,148,053 | + | C2H3g23098 | CX3g027208 | LOC_Os03g07000 | Os03g0166200 | - | Detail |
| C1H3g01458 | 3:3,148,520-3,152,294 | - | C2H3g15876 | CX3g027399 | LOC_Os03g07060 | Os03g0166600 | - | Detail |
| C1H3g04033 | 3:3,159,274-3,164,955 | + | C2H3g12538 | CX3g030094 | LOC_Os03g07080 | Os03g0166800 | - | Detail |
| C1H3g18965 | 3:3,167,474-3,169,003 | + | C2H3g19555 | CX3g030196 | LOC_Os03g07100 | Os03g0167000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g17329 | 1:37,088,803-37,091,952 | - | C1H1g24211 | CX1g003977 | LOC_Os01g72090 | Os01g0949400 | - | Detail |
| C2H1g28530 | 1:37,103,859-37,104,899 | + | C1H1g07252 | CX1g001038 | LOC_Os01g72120 | Os01g0949700 | - | Detail |
| C2H1g18539 | 1:37,105,416-37,106,206 | + | C1H1g22384 | CX1g001038 | LOC_Os01g72130 | Os01g0949750 | - | Detail |
| C2H1g25830 | 1:37,108,958-37,110,117 | + | C1H1g30242 | CX1g001038 | LOC_Os01g72140 | Os01g0949800 | - | Detail |
| C2H1g25821 | 1:37,111,400-37,112,205 | + | C1H1g00771 | CX1g001038 | LOC_Os01g72150 | Os01g0949800 | - | Detail |
| C2H1g04599 | 1:37,112,680-37,113,452 | + | C1H1g09413 | CX1g001038 | LOC_Os01g72160 | Os01g0950000 | - | Detail |
| C2H1g22758 | 1:37,115,808-37,116,527 | + | C1H1g16006 | CX1g001038 | LOC_Os01g72170 | Os01g0950000 | - | Detail |
| C2H1g19803 | 1:37,121,442-37,122,892 | + | C1H1g15694 | CX1g001087 | LOC_Os01g72190 | - | - | Detail |
| C2H1g09890 | 1:37,127,079-37,129,224 | - | C1H1g27599 | CX1g000649 | LOC_Os01g72205 | Os01g0950866 | - | Detail |
| C2H1g20439 | 1:37,129,563-37,133,243 | + | C1H1g26489 | CX1g006637 | LOC_Os01g72210 | Os01g0950900 | - | Detail |
| C2H1g27207 | 1:37,133,523-37,140,278 | - | C1H1g26405 | CX1g001273 | LOC_Os01g72220 | Os01g0951000 | OsFY | Detail |
| C2H1g23592 | 1:37,143,195-37,145,666 | + | C1H1g21234 | CX1g004320 | LOC_Os01g72230 | Os01g0951100 | - | Detail |
| C2H1g09816 | 1:37,147,027-37,150,242 | + | C1H1g03325 | CX1g004161 | LOC_Os01g72240 | Os01g0951200 | - | Detail |
| C2H1g13129 | 1:37,150,976-37,154,541 | + | C1H1g03325 | CX1g005185 | LOC_Os01g72250 | Os01g0951400 | - | Detail |
| C2H1g09971 | 1:37,161,784-37,164,922 | - | C1H1g24604 | CX1g006323 | LOC_Os01g72280 | Os01g0951800 | - | Detail |
| C2H1g11533 | 1:37,173,294-37,174,564 | + | C1H1g13711 | CX1g003867 | LOC_Os01g72290 | Os01g0952000 | - | Detail |
| C2H1g04145 | 1:37,180,918-37,182,059 | + | C1H1g12927 | CX1g000435 | LOC_Os01g72300 | Os01g0952100 | - | Detail |
| C2H1g17493 | 1:37,182,851-37,188,376 | + | C1H1g25821 | CX1g001457 | LOC_Os01g72310 | Os01g0952200 | - | Detail |
| C2H1g24796 | 1:37,188,749-37,196,074 | - | C1H1g12568 | CX1g004562 | LOC_Os01g72320 | Os01g0952300 | - | Detail |
| C2H1g17242 | 1:37,213,051-37,215,357 | + | C1H1g26383 | CX1g002915 | LOC_Os01g72330 | Os01g0952500 | RR4, rr4, OsRR4, Rra3, OsRRA3 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |