| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g13873 | 3:3,055,747-3,058,102 | - | C2H3g12377 | CX3g030325 | LOC_Os03g06890 | Os03g0164800 | - | Detail |
| C1H3g21506 | 3:3,060,235-3,060,681 | + | C2H3g23822 | CX3g029502 | - | Os03g0164901 | - | Detail |
| C1H3g29883 | 3:3,064,309-3,074,566 | - | C2H3g07393 | CX3g026349 | LOC_Os03g06900 | Os03g0165000 | TOP3α | Detail |
| C1H3g17508 | 3:3,074,924-3,079,031 | - | C2H3g24120 | CX3g027841 | LOC_Os03g06910 | Os03g0165100 | - | Detail |
| C1H3g30143 | 3:3,079,689-3,081,251 | + | C2H3g16754 | - | LOC_Os03g06920 | - | - | Detail |
| C1H3g17985 | 3:3,081,610-3,087,726 | + | C2H3g12144 | CX3g027850 | LOC_Os03g06920 | Os03g0165266 | OsCHR730, CHR730 | Detail |
| C1H3g21677 | 3:3,088,619-3,090,688 | - | C2H3g20116 | CX3g028821 | LOC_Os03g06930 | Os03g0165300 | - | Detail |
| C1H3g31542 | 3:3,090,808-3,092,668 | - | C2H3g10784 | - | - | - | - | Detail |
| C1H3g17647 | 3:3,096,730-3,097,161 | + | C2H3g07914 | CX3g025536 | - | Os03g0165375 | - | Detail |
| C1H3g30263 | 3:3,100,263-3,106,732 | - | C2H3g24716 | CX3g028153 | LOC_Os03g06940 | Os03g0165400 | - | Detail |
| C1H3g12191 | 3:3,114,985-3,126,106 | - | C2H3g14394 | CX3g027771 | LOC_Os03g06950 | Os03g0165600 | - | Detail |
| C1H3g13896 | 3:3,127,649-3,129,733 | + | C2H3g15746 | CX3g030842 | LOC_Os03g06960 | Os03g0165800 | - | Detail |
| C1H3g22228 | 3:3,131,396-3,134,167 | - | C2H3g22818 | CX3g028104 | LOC_Os03g06970 | Os03g0165900 | - | Detail |
| C1H3g16704 | 3:3,134,464-3,134,784 | - | C2H3g18146 | - | - | - | - | Detail |
| C1H3g06157 | 3:3,137,781-3,141,091 | - | C2H3g11279 | CX3g026438 | LOC_Os03g06980 | Os03g0166000 | - | Detail |
| C1H3g11602 | 3:3,143,315-3,145,448 | + | C2H3g30212 | CX3g025523 | LOC_Os03g07000 | Os03g0166100 | - | Detail |
| C1H3g09271 | 3:3,146,171-3,148,053 | + | C2H3g23098 | CX3g027208 | LOC_Os03g07000 | Os03g0166200 | - | Detail |
| C1H3g01458 | 3:3,148,520-3,152,294 | - | C2H3g15876 | CX3g027399 | LOC_Os03g07060 | Os03g0166600 | - | Detail |
| C1H3g04033 | 3:3,159,274-3,164,955 | + | C2H3g12538 | CX3g030094 | LOC_Os03g07080 | Os03g0166800 | - | Detail |
| C1H3g18965 | 3:3,167,474-3,169,003 | + | C2H3g19555 | CX3g030196 | LOC_Os03g07100 | Os03g0167000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H6g14212 | 6:23,880,261-23,885,110 | + | C1H6g25709 | CX6g044060 | LOC_Os06g45350 | Os06g0663900 | - | Detail |
| C2H6g28732 | 6:23,886,959-23,887,444 | + | C1H6g04386 | CX6g045376 | - | - | - | Detail |
| C2H6g14654 | 6:23,887,563-23,887,994 | + | - | CX6g042007 | - | - | - | Detail |
| C2H6g24826 | 6:23,888,960-23,897,290 | - | C1H6g08767 | CX6g044758 | LOC_Os06g45360 | Os06g0664100 | - | Detail |
| C2H6g00789 | 6:23,898,594-23,900,645 | - | C1H6g30945 | CX6g042887 | LOC_Os06g45370 | Os06g0664200 | - | Detail |
| C2H6g19748 | 6:23,911,086-23,918,353 | + | C1H6g08586 | CX6g042503 | LOC_Os06g45380 | Os06g0664300 | OsVSR6 | Detail |
| C2H6g01763 | 6:23,919,012-23,922,207 | - | C1H6g03094 | CX6g044595 | LOC_Os06g45390 | Os06g0664400 | - | Detail |
| C2H6g14833 | 6:23,930,926-23,934,033 | + | C1H6g02505 | CX6g045983 | LOC_Os06g45410 | Os06g0664800 | - | Detail |
| C2H6g00067 | 6:23,940,397-23,943,931 | + | C1H6g15108 | CX6g041356 | LOC_Os06g45430 | Os06g0665000 | - | Detail |
| C2H6g17880 | 6:23,944,171-23,945,974 | - | C1H6g06152 | CX6g041675 | LOC_Os06g45440 | Os06g0665100 | - | Detail |
| C2H6g03277 | 6:23,947,369-23,948,616 | - | C1H6g22830 | CX6g045958 | LOC_Os06g45450 | Os06g0665200 | - | Detail |
| C2H6g02226 | 6:23,955,196-23,956,507 | - | C1H6g16253 | CX6g045292 | LOC_Os06g45460 | Os06g0665400 | APO1, apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393 | Detail |
| C2H6g26324 | 6:23,973,298-23,977,524 | - | C1H6g09339 | CX6g042079 | LOC_Os06g45480 | Os06g0665500 | OsAAH | Detail |
| C2H6g03492 | 6:23,986,409-23,992,441 | - | C1H6g29065 | CX6g045639 | LOC_Os06g45500 | Os06g0665800 | HMA9, OsHMA9 ,oshma9-1, oshma9-2, HMA9 | Detail |
| C2H6g11562 | 6:24,002,574-24,004,562 | + | C1H6g18112 | CX6g045580 | LOC_Os06g45510 | Os06g0665900 | - | Detail |
| C2H6g00145 | 6:24,017,803-24,021,672 | + | C1H6g21015 | CX6g042910 | LOC_Os06g45540 | Os06g0666100 | SG6, GL6 | Detail |
| C2H6g07620 | 6:24,062,305-24,066,031 | - | C1H6g25662 | CX6g043004 | LOC_Os06g45590 | Os06g0666600 | - | Detail |
| C2H6g17606 | 6:24,085,963-24,086,711 | - | C1H6g10238 | CX6g042443 | LOC_Os06g45620 | - | - | Detail |
| C2H6g04019 | 6:24,121,466-24,122,742 | + | C1H6g29682 | CX6g045638 | LOC_Os06g45650 | Os06g0667200 | MADS30, OsMADS30 | Detail |
| C2H6g21989 | 6:24,138,577-24,140,168 | + | C1H6g03334 | CX6g045305 | LOC_Os06g45660 | Os06g0667500 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |