| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g12948 | 3:2,877,761-2,883,142 | - | C2H3g11481 | CX3g029615 | LOC_Os03g06520 | Os03g0161200 | - | Detail |
| C1H3g19950 | 3:2,894,688-2,897,060 | + | C2H3g04338 | CX3g031150 | LOC_Os03g06570 | Os03g0161400 | - | Detail |
| C1H3g16884 | 3:2,904,785-2,907,181 | + | C2H3g04897 | CX3g029485 | LOC_Os03g06580 | Os03g0161500 | - | Detail |
| C1H3g31680 | 3:2,912,540-2,913,001 | - | C2H3g20671 | CX3g029738 | LOC_Os03g06610 | Os03g0161600 | OsEPFL6 | Detail |
| C1H3g19723 | 3:2,928,792-2,930,967 | + | C2H3g16543 | CX3g029835 | LOC_Os03g06620 | Os03g0161800 | - | Detail |
| C1H3g17239 | 3:2,932,524-2,934,738 | + | C2H3g18983 | CX3g029527 | LOC_Os03g06630 | Os03g0795900 | HSFA2E, HSfA2e, OsHsfA2e, OsHsf-12, HSF12 | Detail |
| C1H3g19807 | 3:2,946,701-2,949,199 | + | C2H3g18217 | CX3g030288 | LOC_Os03g06654 | Os03g0162000 | COW1, OsCOW1, oscow1, OsYUC8, NAL7, OsYUCCA8, FMO, OsFMO(t) | Detail |
| C1H3g07386 | 3:2,960,172-2,960,742 | + | C2H3g01853 | CX3g030521 | LOC_Os03g06670 | Os03g0162200 | - | Detail |
| C1H3g24759 | 3:2,968,215-2,969,716 | + | C2H3g21314 | CX3g025819 | LOC_Os03g06680 | Os03g0162500 | OsDUF50604 | Detail |
| C1H3g16348 | 3:2,986,722-2,991,271 | + | C2H3g14410 | CX3g029826 | LOC_Os03g06705 | Os03g0162800 | - | Detail |
| C1H3g31273 | 3:2,991,976-2,995,226 | + | C2H3g28634 | - | - | - | - | Detail |
| C1H3g04672 | 3:2,998,751-3,000,234 | + | C2H3g03063 | - | - | Os03g0163000 | - | Detail |
| C1H3g10390 | 3:3,001,288-3,008,868 | + | C2H3g15393 | CX3g025042 | LOC_Os03g06720 | Os03g0163100 | - | Detail |
| C1H3g23541 | 3:3,009,056-3,010,541 | + | C2H3g06714 | CX3g025042 | LOC_Os03g06730 | Os03g0163200 | - | Detail |
| C1H3g17347 | 3:3,011,437-3,016,143 | + | C2H3g22693 | CX3g026090 | LOC_Os03g06740 | Os03g0163300 | - | Detail |
| C1H3g06657 | 3:3,016,729-3,017,562 | - | C2H3g01887 | CX3g029299 | LOC_Os03g06750 | Os03g0163400 | - | Detail |
| C1H3g03297 | 3:3,020,523-3,022,889 | + | C2H3g29355 | CX3g026455 | LOC_Os03g06760 | Os03g0163500 | - | Detail |
| C1H3g08120 | 3:3,028,406-3,028,651 | - | C2H3g28597 | - | LOC_Os03g06790 | Os03g0163600 | - | Detail |
| C1H3g17320 | 3:3,033,403-3,034,251 | - | C2H3g28597 | - | LOC_Os03g06790 | Os03g0163600 | - | Detail |
| C1H3g31538 | 3:3,051,875-3,054,321 | + | C2H3g08001 | CX3g031186 | LOC_Os03g06880 | Os03g0164700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H12g20148 | 12:2,346,213-2,347,171 | - | C1H12g08468 | CX12g017701 | LOC_Os12g05590 | Os12g0152000 | Oscen1, FDR1, RCN3, Oscen1/ FDR1 | Detail |
| C2H12g12457 | 12:2,353,108-2,354,902 | + | C1H12g07729 | CX12g018389 | LOC_Os12g05600 | Os12g0152100 | - | Detail |
| C2H12g13362 | 12:2,370,479-2,371,492 | + | C1H12g30150 | CX12g018389 | LOC_Os12g05630 | Os12g0152500 | - | Detail |
| C2H12g01708 | 12:2,374,830-2,376,992 | - | C1H12g00663 | CX12g017206 | LOC_Os12g05640 | Os12g0152600 | - | Detail |
| C2H12g04327 | 12:2,377,972-2,382,548 | - | C1H12g14242 | CX12g016024 | LOC_Os12g05650 | Os12g0152700 | - | Detail |
| C2H12g22774 | 12:2,389,532-2,394,305 | + | C1H12g29017 | CX12g017584 | LOC_Os12g05660 | Os12g0152800 | - | Detail |
| C2H12g08928 | 12:2,392,365-2,399,334 | - | C1H12g28763 | CX12g016609 | LOC_Os12g05680 | Os12g0152900 | OsbZIP83, TGAL11 | Detail |
| C2H12g05776 | 12:2,433,938-2,434,860 | + | C1H12g29526 | CX12g016099 | LOC_Os12g05730 | Os12g0153500 | - | Detail |
| C2H12g00041 | 12:2,437,797-2,440,161 | + | C1H12g08598 | CX12g015296 | LOC_Os12g05740 | Os12g0153600 | - | Detail |
| C2H12g09749 | 12:2,454,474-2,458,147 | - | C1H12g02157 | CX12g017479 | LOC_Os12g05780 | Os12g0154600 | - | Detail |
| C2H12g04677 | 12:2,461,576-2,464,256 | + | C1H12g30827 | CX12g017672 | LOC_Os12g05810 | Os12g0154400 | - | Detail |
| C2H12g18141 | 12:2,466,115-2,469,408 | + | C1H12g29174 | CX12g018561 | LOC_Os12g05830 | Os12g0154600 | - | Detail |
| C2H12g12501 | 12:2,470,530-2,471,338 | - | C1H12g23452 | CX12g018459 | LOC_Os12g05860 | Os12g0154800 | GLP12-2, OsGLP12-2 | Detail |
| C2H12g27455 | 12:2,474,199-2,476,949 | - | C1H12g24006 | CX12g017127 | LOC_Os12g05860 | Os12g0154800 | GLP12-2, OsGLP12-2 | Detail |
| C2H12g23733 | 12:2,477,950-2,478,757 | - | C1H12g18669 | CX12g015507 | LOC_Os12g05870 | Os12g0154900 | GLP12-3, GLP12-1, OsGLP12-3 | Detail |
| C2H12g06783 | 12:2,480,983-2,481,783 | - | C1H12g28017 | CX12g017127 | LOC_Os12g05860 | Os12g0154800 | GLP12-2, OsGLP12-2 | Detail |
| C2H12g30495 | 12:2,488,547-2,489,374 | - | C1H12g20880 | CX11g013134 | LOC_Os12g05890 | Os12g0155100 | - | Detail |
| C2H12g28920 | 12:2,491,389-2,496,848 | - | C1H12g14419 | CX12g015199 | LOC_Os12g05900 | Os12g0155200 | - | Detail |
| C2H12g08033 | 12:2,506,455-2,513,021 | + | C1H12g09556 | CX12g016405 | LOC_Os12g05920 | Os12g0155300 | - | Detail |
| C2H12g30008 | 12:2,541,475-2,544,415 | + | C1H12g13408 | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |