| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g12948 | 3:2,877,761-2,883,142 | - | C2H3g11481 | CX3g029615 | LOC_Os03g06520 | Os03g0161200 | - | Detail |
| C1H3g19950 | 3:2,894,688-2,897,060 | + | C2H3g04338 | CX3g031150 | LOC_Os03g06570 | Os03g0161400 | - | Detail |
| C1H3g16884 | 3:2,904,785-2,907,181 | + | C2H3g04897 | CX3g029485 | LOC_Os03g06580 | Os03g0161500 | - | Detail |
| C1H3g31680 | 3:2,912,540-2,913,001 | - | C2H3g20671 | CX3g029738 | LOC_Os03g06610 | Os03g0161600 | OsEPFL6 | Detail |
| C1H3g19723 | 3:2,928,792-2,930,967 | + | C2H3g16543 | CX3g029835 | LOC_Os03g06620 | Os03g0161800 | - | Detail |
| C1H3g17239 | 3:2,932,524-2,934,738 | + | C2H3g18983 | CX3g029527 | LOC_Os03g06630 | Os03g0795900 | HSFA2E, HSfA2e, OsHsfA2e, OsHsf-12, HSF12 | Detail |
| C1H3g19807 | 3:2,946,701-2,949,199 | + | C2H3g18217 | CX3g030288 | LOC_Os03g06654 | Os03g0162000 | COW1, OsCOW1, oscow1, OsYUC8, NAL7, OsYUCCA8, FMO, OsFMO(t) | Detail |
| C1H3g07386 | 3:2,960,172-2,960,742 | + | C2H3g01853 | CX3g030521 | LOC_Os03g06670 | Os03g0162200 | - | Detail |
| C1H3g24759 | 3:2,968,215-2,969,716 | + | C2H3g21314 | CX3g025819 | LOC_Os03g06680 | Os03g0162500 | OsDUF50604 | Detail |
| C1H3g16348 | 3:2,986,722-2,991,271 | + | C2H3g14410 | CX3g029826 | LOC_Os03g06705 | Os03g0162800 | - | Detail |
| C1H3g31273 | 3:2,991,976-2,995,226 | + | C2H3g28634 | - | - | - | - | Detail |
| C1H3g04672 | 3:2,998,751-3,000,234 | + | C2H3g03063 | - | - | Os03g0163000 | - | Detail |
| C1H3g10390 | 3:3,001,288-3,008,868 | + | C2H3g15393 | CX3g025042 | LOC_Os03g06720 | Os03g0163100 | - | Detail |
| C1H3g23541 | 3:3,009,056-3,010,541 | + | C2H3g06714 | CX3g025042 | LOC_Os03g06730 | Os03g0163200 | - | Detail |
| C1H3g17347 | 3:3,011,437-3,016,143 | + | C2H3g22693 | CX3g026090 | LOC_Os03g06740 | Os03g0163300 | - | Detail |
| C1H3g06657 | 3:3,016,729-3,017,562 | - | C2H3g01887 | CX3g029299 | LOC_Os03g06750 | Os03g0163400 | - | Detail |
| C1H3g03297 | 3:3,020,523-3,022,889 | + | C2H3g29355 | CX3g026455 | LOC_Os03g06760 | Os03g0163500 | - | Detail |
| C1H3g08120 | 3:3,028,406-3,028,651 | - | C2H3g28597 | - | LOC_Os03g06790 | Os03g0163600 | - | Detail |
| C1H3g17320 | 3:3,033,403-3,034,251 | - | C2H3g28597 | - | LOC_Os03g06790 | Os03g0163600 | - | Detail |
| C1H3g31538 | 3:3,051,875-3,054,321 | + | C2H3g08001 | CX3g031186 | LOC_Os03g06880 | Os03g0164700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H6g20992 | 6:20,786,978-20,788,881 | + | C1H6g05226 | CX6g044623 | LOC_Os06g39906 | Os06g0601000 | - | Detail |
| C2H6g28120 | 6:20,804,013-20,806,774 | + | C1H6g03363 | CX6g042659 | LOC_Os06g39960 | Os06g0601500 | OsbZIP48, OsHY5L2 | Detail |
| C2H6g17237 | 6:20,807,903-20,811,157 | + | C1H6g30468 | CX6g042583 | LOC_Os06g39970 | Os06g0601600 | OsCESA11 | Detail |
| C2H6g29039 | 6:20,821,571-20,826,537 | + | C1H6g18591 | CX6g044674 | LOC_Os06g40020 | Os06g0602400 | OsRH52A | Detail |
| C2H6g11572 | 6:20,841,490-20,843,038 | + | C1H6g01432 | CX6g045252 | LOC_Os06g40040 | Os06g0602600 | - | Detail |
| C2H6g05068 | 6:20,843,594-20,847,246 | - | C1H6g22569 | CX6g041818 | LOC_Os06g40050 | Os06g0602700 | BT1-3, OsBT1-3 | Detail |
| C2H6g14435 | 6:20,862,399-20,866,430 | + | C1H6g14736 | CX6g042177 | LOC_Os06g40060 | Os06g0602800 | - | Detail |
| C2H6g04094 | 6:20,867,690-20,870,961 | - | C1H6g19546 | CX6g041181 | LOC_Os06g40070 | Os06g0602900 | - | Detail |
| C2H6g04563 | 6:20,873,487-20,876,999 | - | C1H6g00043 | CX6g043114 | LOC_Os06g40080 | Os06g0603000 | SE5, Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, PE-1, grc1 | Detail |
| C2H6g18680 | 6:20,895,801-20,899,841 | - | C1H6g11187 | CX6g043946 | LOC_Os06g40120 | Os06g0603600 | OsSPX1 | Detail |
| C2H6g21981 | 6:20,916,404-20,917,475 | - | C1H6g05477 | CX6g044688 | LOC_Os06g40150 | Os06g0604000 | OsWR2 | Detail |
| C2H6g11228 | 6:20,925,550-20,928,685 | - | C1H6g20423 | CX6g045934 | LOC_Os06g40170 | Os06g0604200 | OsPLDα4, OsPLDa4, OsPLDalpha4, PLDalpha4 | Detail |
| C2H6g10259 | 6:20,936,778-20,938,125 | + | - | - | - | - | - | Detail |
| C2H6g26456 | 6:20,939,165-20,942,144 | + | C1H6g10180 | CX6g045594 | LOC_Os06g40180 | Os06g0604300 | OsPLDα5, OsPLDa5, OsPLDalpha5, PLDalpha5 | Detail |
| C2H6g06437 | 6:20,946,189-20,949,815 | + | C1H6g27795 | CX6g041305 | LOC_Os06g40190 | Os06g0604400 | OsPLDα3 | Detail |
| C2H6g13702 | 6:20,952,820-20,956,957 | + | C1H6g25357 | CX6g042132 | LOC_Os06g40200 | Os06g0604500 | - | Detail |
| C2H6g02651 | 6:20,967,982-20,968,696 | + | C1H6g04884 | CX6g044895 | LOC_Os06g40210 | Os06g0604600 | - | Detail |
| C2H6g13160 | 6:20,976,308-20,977,652 | - | C1H6g20614 | CX6g045437 | LOC_Os06g40220 | - | - | Detail |
| C2H6g05081 | 6:20,988,280-20,988,522 | + | C1H6g13328 | CX6g045873 | LOC_Os06g40320 | - | - | Detail |
| C2H6g19267 | 6:21,013,433-21,015,541 | - | C1H6g27028 | CX6g045451 | LOC_Os06g40330 | Os06g0605600 | OsGAMYBL1 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |