| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g11336 | 1:12,744,868-12,745,764 | - | C2H1g08931 | CX1g001694 | LOC_Os01g24820 | Os01g0350300 | - | Detail |
| C1H1g00555 | 1:12,780,209-12,787,876 | + | C2H1g21333 | CX1g002860 | LOC_Os01g24880 | Os01g0350900 | IPI1 | Detail |
| C1H1g05982 | 1:12,795,921-12,802,116 | + | C2H1g14607 | CX1g005272 | LOC_Os01g24940 | Os01g0351100 | - | Detail |
| C1H1g06101 | 1:12,810,973-12,818,003 | + | C2H1g09806 | CX1g000433 | LOC_Os01g24940 | Os01g0351200 | - | Detail |
| C1H1g24498 | 1:12,825,113-12,828,752 | - | C2H1g18699 | CX1g006080 | LOC_Os01g24960 | Os01g0351500 | - | Detail |
| C1H1g12342 | 1:12,834,829-12,837,777 | + | C2H1g23303 | CX1g002020 | LOC_Os01g24980 | Os01g0351800 | - | Detail |
| C1H1g19518 | 1:12,842,812-12,846,024 | + | C2H1g18138 | CX1g002475 | LOC_Os01g25010 | Os01g0352100 | - | Detail |
| C1H1g19827 | 1:12,863,034-12,863,307 | + | C2H1g07713 | CX1g006850 | - | - | - | Detail |
| C1H1g16000 | 1:12,892,251-12,893,187 | + | C2H1g07698 | CX1g003259 | LOC_Os01g25100 | Os01g0353400 | OsGST4 | Detail |
| C1H1g26956 | 1:12,897,173-12,900,081 | + | C2H1g26082 | CX1g006645 | LOC_Os01g25110 | Os01g0353600 | - | Detail |
| C1H1g21653 | 1:12,947,774-12,948,316 | - | C2H1g28232 | CX1g000417 | LOC_Os01g25160 | Os01g0348900 | OsJRL, OsMBL1, OsSalt | Detail |
| C1H1g17593 | 1:12,953,647-12,955,271 | - | C2H1g28563 | CX1g005641 | LOC_Os03g29584 | Os03g0409600 | - | Detail |
| C1H1g31563 | 1:12,956,258-12,965,423 | - | C2H1g15011 | CX1g006951 | LOC_Os01g25189 | Os01g0354200 | - | Detail |
| C1H1g07040 | 1:12,974,443-12,978,461 | + | C2H1g21879 | CX1g002132 | LOC_Os01g25240 | Os01g0354700 | - | Detail |
| C1H1g01971 | 1:13,011,704-13,012,746 | - | - | CX1g003993 | - | - | - | Detail |
| C1H1g30039 | 1:13,033,815-13,034,787 | + | C2H1g17996 | CX1g000600 | LOC_Os01g27580 | Os01g0872900 | - | Detail |
| C1H1g26223 | 1:13,041,692-13,053,739 | - | C2H1g16578 | CX1g005915 | LOC_Os01g25320 | Os01g0355500 | - | Detail |
| C1H1g04484 | 1:13,054,602-13,055,465 | + | C2H1g00764 | CX1g003598 | - | - | - | Detail |
| C1H1g04297 | 1:13,062,797-13,073,588 | + | C2H1g03083 | CX1g006277 | LOC_Os01g25330 | Os01g0355600 | - | Detail |
| C1H1g19528 | 1:13,091,318-13,095,934 | - | C2H1g27635 | CX1g006683 | LOC_Os01g25370 | Os01g0355900 | OsELS1, OsELS1.3 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g25378 | 3:20,452,482-20,455,494 | - | C1H3g07504 | CX3g028607 | LOC_Os03g40070 | Os03g0597600 | - | Detail |
| C2H3g15708 | 3:20,461,389-20,462,651 | - | C1H3g17059 | CX3g026053 | - | - | - | Detail |
| C2H3g07741 | 3:20,480,584-20,483,529 | + | C1H3g25847 | CX3g025955 | LOC_Os03g40100 | Os03g0598100 | - | Detail |
| C2H3g15953 | 3:20,484,589-20,491,503 | - | C1H3g09764 | CX3g025103 | LOC_Os03g40110 | Os03g0598200 | - | Detail |
| C2H3g29831 | 3:20,498,488-20,500,048 | - | C1H3g00363 | CX3g025618 | LOC_Os03g40130 | - | - | Detail |
| C2H3g27050 | 3:20,562,702-20,564,600 | + | C1H3g19636 | CX3g030408 | LOC_Os03g40170 | Os03g0598700 | - | Detail |
| C2H3g27393 | 3:20,566,699-20,568,075 | - | C1H3g15380 | CX3g029644 | LOC_Os03g40180 | Os03g0598800 | - | Detail |
| C2H3g12187 | 3:20,573,203-20,574,179 | - | C1H3g11506 | CX3g030402 | - | Os03g0598900 | - | Detail |
| C2H3g10707 | 3:20,575,201-20,576,553 | - | C1H3g11506 | CX3g030402 | - | Os03g0598900 | - | Detail |
| C2H3g00333 | 3:20,580,622-20,586,375 | - | C1H3g13942 | CX3g029245 | LOC_Os03g40194 | Os03g0599000 | - | Detail |
| C2H3g29952 | 3:20,608,271-20,615,591 | + | C1H3g30883 | CX3g028471 | LOC_Os03g40260 | Os03g0599600 | - | Detail |
| C2H3g19967 | 3:20,616,868-20,619,410 | - | C1H3g13627 | CX3g027014 | LOC_Os03g40270 | Os03g0599800 | OsUAM1, OsRGP1 | Detail |
| C2H3g19579 | 3:20,645,574-20,646,293 | - | C1H3g04627 | CX3g024993 | LOC_Os03g40310 | Os03g0600400 | - | Detail |
| C2H3g25694 | 3:20,648,601-20,649,812 | - | C1H3g04627 | CX3g024993 | LOC_Os03g40310 | Os03g0670700 | - | Detail |
| C2H3g06551 | 3:20,652,877-20,654,082 | - | C1H3g22498 | CX3g027540 | LOC_Os03g40410 | Os03g0600800 | - | Detail |
| C2H3g24621 | 3:20,663,690-20,665,066 | + | C1H3g25700 | CX3g030021 | LOC_Os03g40400 | Os03g0225100 | MPKK10.2, OsMKK10-2, MKK10-2D | Detail |
| C2H3g19831 | 3:20,668,579-20,669,040 | + | C1H3g25700 | CX3g030021 | LOC_Os03g40400 | Os03g0223000 | - | Detail |
| C2H3g14836 | 3:20,673,311-20,675,119 | - | C1H3g22498 | CX3g030088 | LOC_Os03g40410 | Os03g0601100 | - | Detail |
| C2H3g24556 | 3:20,685,428-20,691,581 | + | C1H3g13282 | CX3g025157 | LOC_Os03g40440 | Os03g0601500 | - | Detail |
| C2H3g15462 | 3:20,704,302-20,705,905 | + | C1H3g27087 | CX3g025024 | LOC_Os03g40330 | Os03g0600600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |