| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g08402 | 3:2,768,021-2,772,193 | - | C2H3g18282 | CX3g030115 | LOC_Os03g06290 | Os03g0158700 | - | Detail |
| C1H3g27159 | 3:2,772,594-2,774,096 | + | C2H3g21729 | CX3g028779 | LOC_Os03g13230 | Os03g0158900 | - | Detail |
| C1H3g28868 | 3:2,774,231-2,777,881 | - | C2H3g27396 | CX3g025128 | LOC_Os03g06290 | Os03g0158700 | - | Detail |
| C1H3g19166 | 3:2,781,154-2,784,264 | + | C2H3g05214 | CX3g026196 | LOC_Os03g06330 | Os03g0159100 | - | Detail |
| C1H3g00562 | 3:2,785,161-2,791,188 | + | C2H3g05736 | CX3g029258 | LOC_Os03g06340 | Os03g0159200 | - | Detail |
| C1H3g03543 | 3:2,794,083-2,794,760 | - | C2H3g02146 | CX3g031270 | LOC_Os03g06350 | Os03g0159400 | - | Detail |
| C1H3g19003 | 3:2,799,427-2,800,430 | - | C2H3g07500 | CX3g027894 | LOC_Os03g06360 | Os03g0159600 | - | Detail |
| C1H3g22077 | 3:2,801,035-2,802,655 | + | C2H3g25960 | CX3g031117 | LOC_Os03g06370 | Os03g0159700 | OsNBL3 | Detail |
| C1H3g26257 | 3:2,806,639-2,807,112 | - | C2H3g24140 | CX3g025627 | LOC_Os03g06390 | Os03g0159900 | - | Detail |
| C1H3g14921 | 3:2,811,348-2,818,298 | + | C2H3g08821 | CX3g025658 | LOC_Os03g06410 | Os03g0160100 | ACDR1, SPL3, OsEDR1, OsACDR1, EDR1 | Detail |
| C1H3g04551 | 3:2,818,804-2,821,602 | + | C2H3g02952 | - | - | - | - | Detail |
| C1H3g16143 | 3:2,822,745-2,823,038 | - | C2H3g01208 | CX3g027015 | LOC_Os03g06430 | Os03g0160300 | - | Detail |
| C1H3g24862 | 3:2,825,828-2,830,120 | - | C2H3g27894 | CX3g030159 | LOC_Os03g06440 | Os03g0160400 | OsDNA2_8 | Detail |
| C1H3g27076 | 3:2,839,115-2,842,159 | - | C2H3g10921 | CX3g027024 | LOC_Os03g06460 | Os03g0160600 | - | Detail |
| C1H3g12946 | 3:2,850,274-2,850,882 | - | C2H3g17145 | CX3g031001 | LOC_Os03g06480 | Os03g0160900 | - | Detail |
| C1H3g01001 | 3:2,860,192-2,860,646 | + | C2H3g18147 | - | LOC_Os03g06490 | Os03g0161000 | - | Detail |
| C1H3g27407 | 3:2,860,947-2,861,232 | + | C2H3g23882 | CX3g025715 | - | - | - | Detail |
| C1H3g20415 | 3:2,863,645-2,864,036 | + | C2H3g19291 | CX3g025715 | - | - | - | Detail |
| C1H3g11018 | 3:2,866,355-2,868,463 | + | C2H3g21331 | - | LOC_Os03g06510 | Os03g0161100 | - | Detail |
| C1H3g11682 | 3:2,868,966-2,877,261 | + | C2H3g05410 | CX3g027922 | LOC_Os03g06510 | Os03g0161100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g01132 | 4:25,650,192-25,650,440 | + | C1H4g03657 | CX4g035450 | LOC_Os04g49954 | Os04g0589500 | - | Detail |
| C2H4g25942 | 4:25,651,004-25,653,966 | + | C1H4g04000 | CX4g036452 | LOC_Os04g49960 | Os04g0589600 | - | Detail |
| C2H4g07828 | 4:25,657,268-25,658,527 | + | C1H4g01937 | CX4g033285 | LOC_Os04g49970 | Os04g0589700 | - | Detail |
| C2H4g04763 | 4:25,659,868-25,660,245 | + | - | CX4g031536 | LOC_Os04g49980 | Os04g0589800 | - | Detail |
| C2H4g14617 | 4:25,662,162-25,666,185 | - | C1H4g23513 | CX4g033266 | LOC_Os04g49990 | Os04g0589900 | - | Detail |
| C2H4g17217 | 4:25,668,613-25,669,823 | + | C1H4g02193 | CX4g035591 | LOC_Os04g50020 | Os04g0590100 | - | Detail |
| C2H4g06669 | 4:25,672,460-25,673,377 | - | C1H4g12302 | CX4g036439 | LOC_Os04g50030 | Os04g0590200 | OsAHL9 | Detail |
| C2H4g09729 | 4:25,688,971-25,690,329 | - | C1H4g13780 | - | - | - | - | Detail |
| C2H4g13547 | 4:25,692,693-25,695,012 | + | C1H4g18122 | CX4g033121 | LOC_Os04g50060 | Os04g0590400 | OsGRAS23, GRAS23 | Detail |
| C2H4g26547 | 4:25,710,259-25,714,577 | + | C1H4g31900 | CX4g035797 | LOC_Os04g50090 | Os04g0590800 | - | Detail |
| C2H4g13442 | 4:25,717,262-25,718,413 | - | C1H4g23703 | CX4g032886 | LOC_Os04g50100 | Os04g0590900 | - | Detail |
| C2H4g02078 | 4:25,721,680-25,724,817 | - | C1H4g21960 | CX4g033322 | LOC_Os04g50110 | Os04g0591000 | - | Detail |
| C2H4g13975 | 4:25,734,463-25,735,787 | - | C1H4g24153 | CX4g034842 | LOC_Os04g50120 | Os04g0591100 | - | Detail |
| C2H4g25291 | 4:25,744,754-25,745,293 | + | - | CX4g032856 | LOC_Os04g50176 | Os04g0591300 | - | Detail |
| C2H4g07571 | 4:25,758,251-25,759,780 | - | C1H4g23201 | CX4g034407 | LOC_Os04g50200 | Os04g0591900 | - | Detail |
| C2H4g02751 | 4:25,765,114-25,768,209 | + | C1H4g20135 | CX4g033568 | LOC_Os04g50204 | Os04g0592400 | - | Detail |
| C2H4g26050 | 4:25,769,660-25,773,036 | - | C1H4g07229 | CX4g034823 | LOC_Os04g50208 | Os04g0592500 | - | Detail |
| C2H4g14985 | 4:25,773,909-25,776,482 | - | C1H4g17911 | CX4g036584 | LOC_Os04g50216 | Os04g0592600 | - | Detail |
| C2H4g11940 | 4:25,780,460-25,786,739 | - | C1H4g26639 | CX4g032082 | LOC_Os04g50660 | Os04g0592700 | - | Detail |
| C2H4g11781 | 4:25,790,673-25,791,994 | - | C1H4g07059 | CX4g035171 | LOC_Os04g50680 | Os04g0593200 | Os2R_MYB50 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |