| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g08402 | 3:2,768,021-2,772,193 | - | C2H3g18282 | CX3g030115 | LOC_Os03g06290 | Os03g0158700 | - | Detail |
| C1H3g27159 | 3:2,772,594-2,774,096 | + | C2H3g21729 | CX3g028779 | LOC_Os03g13230 | Os03g0158900 | - | Detail |
| C1H3g28868 | 3:2,774,231-2,777,881 | - | C2H3g27396 | CX3g025128 | LOC_Os03g06290 | Os03g0158700 | - | Detail |
| C1H3g19166 | 3:2,781,154-2,784,264 | + | C2H3g05214 | CX3g026196 | LOC_Os03g06330 | Os03g0159100 | - | Detail |
| C1H3g00562 | 3:2,785,161-2,791,188 | + | C2H3g05736 | CX3g029258 | LOC_Os03g06340 | Os03g0159200 | - | Detail |
| C1H3g03543 | 3:2,794,083-2,794,760 | - | C2H3g02146 | CX3g031270 | LOC_Os03g06350 | Os03g0159400 | - | Detail |
| C1H3g19003 | 3:2,799,427-2,800,430 | - | C2H3g07500 | CX3g027894 | LOC_Os03g06360 | Os03g0159600 | - | Detail |
| C1H3g22077 | 3:2,801,035-2,802,655 | + | C2H3g25960 | CX3g031117 | LOC_Os03g06370 | Os03g0159700 | OsNBL3 | Detail |
| C1H3g26257 | 3:2,806,639-2,807,112 | - | C2H3g24140 | CX3g025627 | LOC_Os03g06390 | Os03g0159900 | - | Detail |
| C1H3g14921 | 3:2,811,348-2,818,298 | + | C2H3g08821 | CX3g025658 | LOC_Os03g06410 | Os03g0160100 | ACDR1, SPL3, OsEDR1, OsACDR1, EDR1 | Detail |
| C1H3g04551 | 3:2,818,804-2,821,602 | + | C2H3g02952 | - | - | - | - | Detail |
| C1H3g16143 | 3:2,822,745-2,823,038 | - | C2H3g01208 | CX3g027015 | LOC_Os03g06430 | Os03g0160300 | - | Detail |
| C1H3g24862 | 3:2,825,828-2,830,120 | - | C2H3g27894 | CX3g030159 | LOC_Os03g06440 | Os03g0160400 | OsDNA2_8 | Detail |
| C1H3g27076 | 3:2,839,115-2,842,159 | - | C2H3g10921 | CX3g027024 | LOC_Os03g06460 | Os03g0160600 | - | Detail |
| C1H3g12946 | 3:2,850,274-2,850,882 | - | C2H3g17145 | CX3g031001 | LOC_Os03g06480 | Os03g0160900 | - | Detail |
| C1H3g01001 | 3:2,860,192-2,860,646 | + | C2H3g18147 | - | LOC_Os03g06490 | Os03g0161000 | - | Detail |
| C1H3g27407 | 3:2,860,947-2,861,232 | + | C2H3g23882 | CX3g025715 | - | - | - | Detail |
| C1H3g20415 | 3:2,863,645-2,864,036 | + | C2H3g19291 | CX3g025715 | - | - | - | Detail |
| C1H3g11018 | 3:2,866,355-2,868,463 | + | C2H3g21331 | - | LOC_Os03g06510 | Os03g0161100 | - | Detail |
| C1H3g11682 | 3:2,868,966-2,877,261 | + | C2H3g05410 | CX3g027922 | LOC_Os03g06510 | Os03g0161100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g18427 | 2:12,043,001-12,047,932 | - | C1H2g29974 | CX2g022774 | LOC_Os02g22140 | Os02g0327100 | - | Detail |
| C2H2g15963 | 2:12,058,884-12,059,671 | - | C1H2g18082 | - | - | - | - | Detail |
| C2H2g01720 | 2:12,083,531-12,086,807 | + | C1H2g30192 | CX2g019787 | LOC_Os02g22160 | Os02g0327500 | - | Detail |
| C2H2g04892 | 2:12,113,521-12,120,407 | + | C1H2g12682 | CX2g020397 | - | - | - | Detail |
| C2H2g22267 | 2:12,123,543-12,128,403 | - | C1H4g03520 | CX2g023180 | LOC_Os03g21310 | Os02g0164000 | - | Detail |
| C2H2g21415 | 2:12,135,255-12,137,927 | - | C1H2g13944 | - | - | - | - | Detail |
| C2H2g14402 | 2:12,138,462-12,138,932 | - | C1H2g01926 | CX2g020091 | - | Os12g0534400 | - | Detail |
| C2H2g01200 | 2:12,139,578-12,140,467 | - | C1H2g01926 | CX2g020091 | - | - | - | Detail |
| C2H2g06243 | 2:12,173,035-12,177,264 | - | C1H2g21103 | CX2g021589 | LOC_Os02g22190 | Os02g0327700 | - | Detail |
| C2H2g30636 | 2:12,225,442-12,236,870 | + | C1H2g00957 | CX2g019841 | LOC_Os02g22260 | Os02g0328300 | - | Detail |
| C2H2g26034 | 2:12,238,037-12,239,307 | - | C1H2g02463 | CX2g021293 | LOC_Os11g36920 | Os02g0328500 | - | Detail |
| C2H2g15637 | 2:12,270,608-12,280,886 | + | C1H2g08778 | CX2g019629 | LOC_Os02g22370 | Os02g0329300 | - | Detail |
| C2H2g20325 | 2:12,281,470-12,283,121 | - | C1H2g22071 | - | - | Os04g0194800 | - | Detail |
| C2H2g27549 | 2:12,283,358-12,283,856 | - | C1H2g05163 | - | LOC_Os02g22374 | Os02g0329600 | - | Detail |
| C2H2g06904 | 2:12,288,135-12,290,700 | + | C1H2g11649 | CX2g020527 | LOC_Os02g22380 | Os02g0329800 | XAX1, OsXAX1 | Detail |
| C2H2g01429 | 2:12,322,339-12,325,231 | + | C1H2g21783 | CX2g023995 | LOC_Os02g22480 | Os02g0330200 | OsXAT2 | Detail |
| C2H2g06303 | 2:12,424,192-12,426,763 | + | C1H2g05643 | CX2g021079 | LOC_Os02g22650 | Os02g0331200 | - | Detail |
| C2H2g13933 | 2:12,454,794-12,456,966 | - | C1H2g13699 | CX2g022847 | LOC_Os02g22680 | Os02g0331400 | - | Detail |
| C2H2g10693 | 2:12,528,982-12,534,068 | - | C1H2g20055 | CX2g020636 | LOC_Os02g22780 | Os02g0332200 | - | Detail |
| C2H2g27480 | 2:13,019,497-13,027,318 | + | C1H2g26611 | CX2g020707 | LOC_Os02g23823 | Os02g0433600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |