| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g08402 | 3:2,768,021-2,772,193 | - | C2H3g18282 | CX3g030115 | LOC_Os03g06290 | Os03g0158700 | - | Detail |
| C1H3g27159 | 3:2,772,594-2,774,096 | + | C2H3g21729 | CX3g028779 | LOC_Os03g13230 | Os03g0158900 | - | Detail |
| C1H3g28868 | 3:2,774,231-2,777,881 | - | C2H3g27396 | CX3g025128 | LOC_Os03g06290 | Os03g0158700 | - | Detail |
| C1H3g19166 | 3:2,781,154-2,784,264 | + | C2H3g05214 | CX3g026196 | LOC_Os03g06330 | Os03g0159100 | - | Detail |
| C1H3g00562 | 3:2,785,161-2,791,188 | + | C2H3g05736 | CX3g029258 | LOC_Os03g06340 | Os03g0159200 | - | Detail |
| C1H3g03543 | 3:2,794,083-2,794,760 | - | C2H3g02146 | CX3g031270 | LOC_Os03g06350 | Os03g0159400 | - | Detail |
| C1H3g19003 | 3:2,799,427-2,800,430 | - | C2H3g07500 | CX3g027894 | LOC_Os03g06360 | Os03g0159600 | - | Detail |
| C1H3g22077 | 3:2,801,035-2,802,655 | + | C2H3g25960 | CX3g031117 | LOC_Os03g06370 | Os03g0159700 | OsNBL3 | Detail |
| C1H3g26257 | 3:2,806,639-2,807,112 | - | C2H3g24140 | CX3g025627 | LOC_Os03g06390 | Os03g0159900 | - | Detail |
| C1H3g14921 | 3:2,811,348-2,818,298 | + | C2H3g08821 | CX3g025658 | LOC_Os03g06410 | Os03g0160100 | ACDR1, SPL3, OsEDR1, OsACDR1, EDR1 | Detail |
| C1H3g04551 | 3:2,818,804-2,821,602 | + | C2H3g02952 | - | - | - | - | Detail |
| C1H3g16143 | 3:2,822,745-2,823,038 | - | C2H3g01208 | CX3g027015 | LOC_Os03g06430 | Os03g0160300 | - | Detail |
| C1H3g24862 | 3:2,825,828-2,830,120 | - | C2H3g27894 | CX3g030159 | LOC_Os03g06440 | Os03g0160400 | OsDNA2_8 | Detail |
| C1H3g27076 | 3:2,839,115-2,842,159 | - | C2H3g10921 | CX3g027024 | LOC_Os03g06460 | Os03g0160600 | - | Detail |
| C1H3g12946 | 3:2,850,274-2,850,882 | - | C2H3g17145 | CX3g031001 | LOC_Os03g06480 | Os03g0160900 | - | Detail |
| C1H3g01001 | 3:2,860,192-2,860,646 | + | C2H3g18147 | - | LOC_Os03g06490 | Os03g0161000 | - | Detail |
| C1H3g27407 | 3:2,860,947-2,861,232 | + | C2H3g23882 | CX3g025715 | - | - | - | Detail |
| C1H3g20415 | 3:2,863,645-2,864,036 | + | C2H3g19291 | CX3g025715 | - | - | - | Detail |
| C1H3g11018 | 3:2,866,355-2,868,463 | + | C2H3g21331 | - | LOC_Os03g06510 | Os03g0161100 | - | Detail |
| C1H3g11682 | 3:2,868,966-2,877,261 | + | C2H3g05410 | CX3g027922 | LOC_Os03g06510 | Os03g0161100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g07907 | 2:9,612,465-9,613,231 | + | C1H2g23683 | - | - | Os02g0284300 | - | Detail |
| C2H2g22092 | 2:9,626,818-9,631,529 | + | C1H2g11438 | CX2g024875 | LOC_Os02g18370 | Os02g0284500 | TAP | Detail |
| C2H2g21013 | 2:9,652,901-9,654,544 | - | C1H2g26314 | CX2g021748 | LOC_Os02g18410 | Os02g0285300 | - | Detail |
| C2H2g23832 | 2:9,663,153-9,665,054 | - | C1H2g07273 | CX2g023523 | LOC_Os02g18430 | Os02g0285700 | - | Detail |
| C2H2g26794 | 2:9,676,411-9,683,990 | + | C1H2g22840 | CX2g018876 | LOC_Os02g18450 | Os02g0285800 | - | Detail |
| C2H2g27610 | 2:9,684,291-9,685,883 | - | C1H2g00859 | CX2g018950 | LOC_Os02g18460 | Os02g0285900 | - | Detail |
| C2H2g12771 | 2:9,707,519-9,711,152 | + | C1H2g08140 | CX2g020301 | LOC_Os02g18480 | Os02g0286200 | - | Detail |
| C2H2g22028 | 2:9,719,609-9,722,527 | - | C1H2g24590 | CX2g022175 | LOC_Os02g18550 | Os02g0287000 | - | Detail |
| C2H2g22070 | 2:9,739,791-9,743,121 | - | C1H2g05642 | CX2g023220 | LOC_Os02g18650 | Os02g0288100 | - | Detail |
| C2H2g19177 | 2:9,746,414-9,750,644 | + | C1H2g19267 | CX2g018977 | LOC_Os02g18660 | Os02g0288200 | - | Detail |
| C2H2g26399 | 2:9,766,803-9,772,531 | - | C1H2g31274 | CX2g019572 | LOC_Os02g18670 | Os02g0288400 | - | Detail |
| C2H2g23610 | 2:9,783,672-9,786,230 | - | C1H2g21282 | CX2g024446 | LOC_Os02g18690 | Os02g0288600 | - | Detail |
| C2H2g11555 | 2:9,787,954-9,788,382 | - | C1H2g21282 | CX2g024446 | LOC_Os02g18690 | - | - | Detail |
| C2H2g06348 | 2:9,799,150-9,804,767 | - | C1H2g14772 | CX2g019572 | LOC_Os02g18670 | Os02g0288400 | - | Detail |
| C2H2g20798 | 2:9,810,678-9,814,495 | - | C1H2g20847 | CX2g024606 | LOC_Os02g21340 | Os02g0318450 | - | Detail |
| C2H2g01298 | 2:9,818,998-9,819,207 | - | - | - | - | - | - | Detail |
| C2H2g29157 | 2:9,839,789-9,848,134 | + | - | - | - | - | - | Detail |
| C2H2g27765 | 2:9,849,515-9,863,786 | - | C1H2g06145 | CX2g024827 | LOC_Os02g18820 | Os02g0290300 | SLG2 | Detail |
| C2H2g17529 | 2:9,867,729-9,870,543 | + | C1H2g17019 | CX2g024204 | LOC_Os02g18830 | Os02g0290400 | - | Detail |
| C2H2g30224 | 2:9,871,338-9,874,683 | - | C1H2g27720 | CX2g021037 | LOC_Os02g18840 | Os02g0290500 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |