| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g08402 | 3:2,768,021-2,772,193 | - | C2H3g18282 | CX3g030115 | LOC_Os03g06290 | Os03g0158700 | - | Detail |
| C1H3g27159 | 3:2,772,594-2,774,096 | + | C2H3g21729 | CX3g028779 | LOC_Os03g13230 | Os03g0158900 | - | Detail |
| C1H3g28868 | 3:2,774,231-2,777,881 | - | C2H3g27396 | CX3g025128 | LOC_Os03g06290 | Os03g0158700 | - | Detail |
| C1H3g19166 | 3:2,781,154-2,784,264 | + | C2H3g05214 | CX3g026196 | LOC_Os03g06330 | Os03g0159100 | - | Detail |
| C1H3g00562 | 3:2,785,161-2,791,188 | + | C2H3g05736 | CX3g029258 | LOC_Os03g06340 | Os03g0159200 | - | Detail |
| C1H3g03543 | 3:2,794,083-2,794,760 | - | C2H3g02146 | CX3g031270 | LOC_Os03g06350 | Os03g0159400 | - | Detail |
| C1H3g19003 | 3:2,799,427-2,800,430 | - | C2H3g07500 | CX3g027894 | LOC_Os03g06360 | Os03g0159600 | - | Detail |
| C1H3g22077 | 3:2,801,035-2,802,655 | + | C2H3g25960 | CX3g031117 | LOC_Os03g06370 | Os03g0159700 | OsNBL3 | Detail |
| C1H3g26257 | 3:2,806,639-2,807,112 | - | C2H3g24140 | CX3g025627 | LOC_Os03g06390 | Os03g0159900 | - | Detail |
| C1H3g14921 | 3:2,811,348-2,818,298 | + | C2H3g08821 | CX3g025658 | LOC_Os03g06410 | Os03g0160100 | ACDR1, SPL3, OsEDR1, OsACDR1, EDR1 | Detail |
| C1H3g04551 | 3:2,818,804-2,821,602 | + | C2H3g02952 | - | - | - | - | Detail |
| C1H3g16143 | 3:2,822,745-2,823,038 | - | C2H3g01208 | CX3g027015 | LOC_Os03g06430 | Os03g0160300 | - | Detail |
| C1H3g24862 | 3:2,825,828-2,830,120 | - | C2H3g27894 | CX3g030159 | LOC_Os03g06440 | Os03g0160400 | OsDNA2_8 | Detail |
| C1H3g27076 | 3:2,839,115-2,842,159 | - | C2H3g10921 | CX3g027024 | LOC_Os03g06460 | Os03g0160600 | - | Detail |
| C1H3g12946 | 3:2,850,274-2,850,882 | - | C2H3g17145 | CX3g031001 | LOC_Os03g06480 | Os03g0160900 | - | Detail |
| C1H3g01001 | 3:2,860,192-2,860,646 | + | C2H3g18147 | - | LOC_Os03g06490 | Os03g0161000 | - | Detail |
| C1H3g27407 | 3:2,860,947-2,861,232 | + | C2H3g23882 | CX3g025715 | - | - | - | Detail |
| C1H3g20415 | 3:2,863,645-2,864,036 | + | C2H3g19291 | CX3g025715 | - | - | - | Detail |
| C1H3g11018 | 3:2,866,355-2,868,463 | + | C2H3g21331 | - | LOC_Os03g06510 | Os03g0161100 | - | Detail |
| C1H3g11682 | 3:2,868,966-2,877,261 | + | C2H3g05410 | CX3g027922 | LOC_Os03g06510 | Os03g0161100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H12g00859 | 12:21,299,825-21,300,202 | - | C1H12g14138 | CX12g015042 | - | - | - | Detail |
| C2H12g27662 | 12:21,309,037-21,309,420 | - | - | - | - | - | - | Detail |
| C2H12g08947 | 12:21,324,011-21,327,245 | - | C1H12g27138 | CX12g018548 | LOC_Os12g40960 | Os12g0602450 | SKL1 | Detail |
| C2H12g02053 | 12:21,361,840-21,364,753 | - | C1H12g21999 | CX12g015892 | LOC_Os12g41060 | Os12g0603300 | - | Detail |
| C2H12g10737 | 12:21,372,132-21,372,745 | - | C1H12g11611 | - | - | - | - | Detail |
| C2H12g20271 | 12:21,386,159-21,387,520 | - | C1H12g06197 | CX12g018729 | LOC_Os12g41090 | Os12g0603700 | - | Detail |
| C2H12g25612 | 12:21,403,222-21,403,728 | + | C1H12g15716 | CX12g015553 | LOC_Os12g41110 | Os12g0603800 | - | Detail |
| C2H12g14638 | 12:21,425,044-21,427,871 | - | - | - | - | - | - | Detail |
| C2H12g22105 | 12:21,427,922-21,428,149 | - | C1H12g14337 | CX12g015565 | LOC_Os12g41140 | - | - | Detail |
| C2H12g19927 | 12:21,428,207-21,433,564 | - | C1H12g24392 | CX12g015565 | LOC_Os12g41140 | Os12g0604200 | - | Detail |
| C2H12g22739 | 12:21,442,599-21,444,011 | + | C1H12g04820 | CX12g016903 | LOC_Os12g41160 | Os12g0604500 | - | Detail |
| C2H12g04417 | 12:21,445,734-21,453,273 | + | C1H12g09963 | CX12g017392 | LOC_Os12g41170 | Os12g0604600 | - | Detail |
| C2H12g14370 | 12:21,454,919-21,459,197 | - | C1H12g00965 | CX12g016784 | LOC_Os12g41180 | Os12g0604700 | - | Detail |
| C2H12g22374 | 12:21,465,726-21,469,742 | - | C1H12g10619 | CX12g015334 | LOC_Os12g41190 | Os12g0604800 | - | Detail |
| C2H12g12219 | 12:21,470,752-21,479,536 | - | C1H12g01386 | CX12g016681 | LOC_Os12g41200 | Os12g0605200 | - | Detail |
| C2H12g25034 | 12:21,488,779-21,492,562 | - | C1H12g29532 | CX12g016794 | LOC_Os12g41210 | Os12g0605300 | - | Detail |
| C2H12g17755 | 12:21,494,399-21,496,422 | - | C1H12g09742 | CX9g054933 | LOC_Os12g41220 | Os12g0605400 | OsUEV1B | Detail |
| C2H12g09059 | 12:21,496,986-21,504,354 | - | C1H12g12734 | CX12g017137 | LOC_Os12g41230 | Os12g0605500 | - | Detail |
| C2H12g19406 | 12:21,507,553-21,513,098 | + | C1H12g31534 | CX12g018485 | LOC_Os12g41250 | Os12g0605800 | - | Detail |
| C2H12g23124 | 12:21,513,851-21,516,792 | + | C1H12g16071 | CX12g016368 | LOC_Os12g41260 | Os12g0605900 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |