| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g08402 | 3:2,768,021-2,772,193 | - | C2H3g18282 | CX3g030115 | LOC_Os03g06290 | Os03g0158700 | - | Detail |
| C1H3g27159 | 3:2,772,594-2,774,096 | + | C2H3g21729 | CX3g028779 | LOC_Os03g13230 | Os03g0158900 | - | Detail |
| C1H3g28868 | 3:2,774,231-2,777,881 | - | C2H3g27396 | CX3g025128 | LOC_Os03g06290 | Os03g0158700 | - | Detail |
| C1H3g19166 | 3:2,781,154-2,784,264 | + | C2H3g05214 | CX3g026196 | LOC_Os03g06330 | Os03g0159100 | - | Detail |
| C1H3g00562 | 3:2,785,161-2,791,188 | + | C2H3g05736 | CX3g029258 | LOC_Os03g06340 | Os03g0159200 | - | Detail |
| C1H3g03543 | 3:2,794,083-2,794,760 | - | C2H3g02146 | CX3g031270 | LOC_Os03g06350 | Os03g0159400 | - | Detail |
| C1H3g19003 | 3:2,799,427-2,800,430 | - | C2H3g07500 | CX3g027894 | LOC_Os03g06360 | Os03g0159600 | - | Detail |
| C1H3g22077 | 3:2,801,035-2,802,655 | + | C2H3g25960 | CX3g031117 | LOC_Os03g06370 | Os03g0159700 | OsNBL3 | Detail |
| C1H3g26257 | 3:2,806,639-2,807,112 | - | C2H3g24140 | CX3g025627 | LOC_Os03g06390 | Os03g0159900 | - | Detail |
| C1H3g14921 | 3:2,811,348-2,818,298 | + | C2H3g08821 | CX3g025658 | LOC_Os03g06410 | Os03g0160100 | ACDR1, SPL3, OsEDR1, OsACDR1, EDR1 | Detail |
| C1H3g04551 | 3:2,818,804-2,821,602 | + | C2H3g02952 | - | - | - | - | Detail |
| C1H3g16143 | 3:2,822,745-2,823,038 | - | C2H3g01208 | CX3g027015 | LOC_Os03g06430 | Os03g0160300 | - | Detail |
| C1H3g24862 | 3:2,825,828-2,830,120 | - | C2H3g27894 | CX3g030159 | LOC_Os03g06440 | Os03g0160400 | OsDNA2_8 | Detail |
| C1H3g27076 | 3:2,839,115-2,842,159 | - | C2H3g10921 | CX3g027024 | LOC_Os03g06460 | Os03g0160600 | - | Detail |
| C1H3g12946 | 3:2,850,274-2,850,882 | - | C2H3g17145 | CX3g031001 | LOC_Os03g06480 | Os03g0160900 | - | Detail |
| C1H3g01001 | 3:2,860,192-2,860,646 | + | C2H3g18147 | - | LOC_Os03g06490 | Os03g0161000 | - | Detail |
| C1H3g27407 | 3:2,860,947-2,861,232 | + | C2H3g23882 | CX3g025715 | - | - | - | Detail |
| C1H3g20415 | 3:2,863,645-2,864,036 | + | C2H3g19291 | CX3g025715 | - | - | - | Detail |
| C1H3g11018 | 3:2,866,355-2,868,463 | + | C2H3g21331 | - | LOC_Os03g06510 | Os03g0161100 | - | Detail |
| C1H3g11682 | 3:2,868,966-2,877,261 | + | C2H3g05410 | CX3g027922 | LOC_Os03g06510 | Os03g0161100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H11g24829 | 11:24,833,235-24,839,165 | + | C1H11g18630 | - | - | Os11g0696600 | - | Detail |
| C2H11g22023 | 11:24,840,079-24,840,792 | + | - | - | - | - | - | Detail |
| C2H11g28625 | 11:24,844,221-24,845,573 | + | C1H11g09166 | - | - | - | - | Detail |
| C2H11g02299 | 11:24,847,897-24,850,142 | - | C1H11g18304 | CX11g014713 | LOC_Os11g47390 | Os11g0696900 | - | Detail |
| C2H11g05964 | 11:24,851,652-24,852,573 | - | - | CX11g014536 | - | - | - | Detail |
| C2H11g01524 | 11:24,877,507-24,877,853 | + | C1H11g09170 | CX11g014979 | LOC_Os11g47441 | Os11g0699532 | - | Detail |
| C2H11g22015 | 11:24,908,771-24,911,844 | + | C1H11g28594 | CX11g014691 | LOC_Os11g47447 | Os11g0700100 | - | Detail |
| C2H11g14378 | 11:24,958,996-24,961,251 | - | C1H11g17473 | CX11g014459 | LOC_Os11g47460 | Os11g0700500 | OsMYBAS1 | Detail |
| C2H11g14896 | 11:24,976,825-24,977,172 | + | - | - | - | - | - | Detail |
| C2H11g03415 | 11:24,979,391-24,980,305 | - | C1H11g28548 | CX11g010968 | LOC_Os11g47500 | Os11g0700900 | - | Detail |
| C2H11g19864 | 11:24,984,073-24,985,011 | - | C1H11g28548 | CX11g013722 | LOC_Os11g47510 | Os11g0701000 | - | Detail |
| C2H11g21265 | 11:24,986,477-24,987,346 | + | C1H11g28548 | CX11g014219 | LOC_Os11g47520 | Os11g0701100 | - | Detail |
| C2H11g11867 | 11:24,989,749-24,990,624 | + | C1H11g14521 | CX11g014219 | LOC_Os11g47530 | Os11g0701200 | - | Detail |
| C2H11g24600 | 11:25,003,819-25,004,688 | + | C1H11g25719 | CX11g014219 | LOC_Os11g47550 | Os11g0701400 | - | Detail |
| C2H11g14715 | 11:25,007,418-25,008,272 | + | C1H11g05290 | CX11g014219 | LOC_Os11g47560 | Os11g0701500 | - | Detail |
| C2H11g14762 | 11:25,013,082-25,013,924 | + | C1H11g00801 | CX11g014219 | LOC_Os11g47570 | Os11g0701600 | - | Detail |
| C2H11g09809 | 11:25,019,236-25,020,150 | + | C1H11g14521 | CX11g013722 | LOC_Os11g47580 | Os11g0701800 | RIXI | Detail |
| C2H11g22025 | 11:25,021,447-25,022,349 | - | C1H11g05570 | CX11g010989 | LOC_Os11g47590 | Os11g0701900 | - | Detail |
| C2H11g10596 | 11:25,024,338-25,025,243 | - | C1H11g05570 | CX11g012151 | LOC_Os11g47600 | Os11g0702100 | - | Detail |
| C2H11g15669 | 11:25,025,910-25,026,818 | - | C1H11g05570 | CX11g013345 | LOC_Os11g47610 | Os11g0702200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |