| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g08260 | 3:2,259,582-2,262,525 | + | C2H3g06828 | CX3g030037 | LOC_Os03g05270 | Os03g0145900 | - | Detail |
| C1H3g20268 | 3:2,263,976-2,264,901 | - | C2H3g21623 | CX3g028017 | - | - | - | Detail |
| C1H3g29909 | 3:2,265,126-2,270,153 | + | C2H3g05886 | CX3g029228 | LOC_Os03g05280 | Os03g0146000 | - | Detail |
| C1H3g25012 | 3:2,274,096-2,275,920 | - | C2H3g28085 | CX3g029808 | LOC_Os03g05290 | Os03g0146100 | - | Detail |
| C1H3g19868 | 3:2,280,784-2,281,256 | + | C2H3g09242 | CX3g025472 | LOC_Os03g05300 | Os03g0146300 | - | Detail |
| C1H3g27335 | 3:2,285,142-2,289,430 | + | C2H3g13895 | CX3g025739 | LOC_Os03g05310 | Os03g0146400 | - | Detail |
| C1H3g02545 | 3:2,292,095-2,292,415 | + | C2H3g14044 | CX3g026084 | - | - | - | Detail |
| C1H3g29062 | 3:2,292,424-2,294,517 | + | C2H3g11885 | CX3g026084 | LOC_Os03g05320 | Os03g0146500 | - | Detail |
| C1H3g17015 | 3:2,295,444-2,316,133 | + | C2H3g15286 | CX3g025922 | LOC_Os03g05330 | Os03g0146600 | - | Detail |
| C1H3g05189 | 3:2,330,831-2,331,278 | - | - | - | - | - | - | Detail |
| C1H3g30836 | 3:2,336,655-2,347,097 | - | C2H3g18202 | CX3g029888 | LOC_Os03g05390 | Os03g0147400 | - | Detail |
| C1H3g06760 | 3:2,356,866-2,361,842 | - | C2H3g23117 | CX3g025434 | LOC_Os03g05420 | Os03g0147700 | - | Detail |
| C1H3g11420 | 3:2,362,605-2,364,829 | + | C2H3g11846 | CX3g028095 | LOC_Os03g05430 | Os03g0147900 | - | Detail |
| C1H3g01679 | 3:2,365,435-2,366,677 | - | C2H3g18230 | CX3g027224 | LOC_Os03g05440 | Os03g0148000 | - | Detail |
| C1H3g05732 | 3:2,375,010-2,376,066 | - | C2H3g10578 | CX3g025933 | LOC_Os03g05450 | Os03g0148300 | - | Detail |
| C1H3g20087 | 3:2,378,263-2,379,597 | - | C2H3g08315 | CX3g026676 | LOC_Os03g05460 | Os03g0148400 | - | Detail |
| C1H3g24625 | 3:2,386,225-2,389,760 | + | C2H3g07329 | CX3g026748 | LOC_Os03g05470 | Os03g0148700 | - | Detail |
| C1H3g03956 | 3:2,393,000-2,395,698 | - | C2H3g09418 | CX3g025264 | LOC_Os03g05480 | Os03g0148800 | - | Detail |
| C1H3g20130 | 3:2,402,864-2,403,494 | + | C2H3g30161 | CX3g031194 | LOC_Os03g05500 | Os03g0149000 | - | Detail |
| C1H3g20743 | 3:2,406,487-2,407,344 | - | C2H3g15126 | CX3g024956 | LOC_Os03g05510 | Os03g0149100 | CRL1, crl1, crl1*, ARL1, ARL1/CRL1 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g26723 | 4:27,124,698-27,125,142 | - | C1H4g13879 | CX4g031575 | LOC_Os04g52950 | Os04g0620600 | - | Detail |
| C2H4g15421 | 4:27,126,398-27,133,523 | + | C1H4g14650 | CX4g033766 | LOC_Os04g52960 | Os04g0620700 | OsNUC1-S | Detail |
| C2H4g09472 | 4:27,134,413-27,134,637 | + | C1H4g00045 | - | - | - | - | Detail |
| C2H4g07456 | 4:27,136,055-27,142,709 | + | C1H4g13741 | CX4g035632 | LOC_Os04g52970 | Os04g0620950 | - | Detail |
| C2H4g04192 | 4:27,149,114-27,152,410 | + | C1H4g13741 | CX4g035632 | LOC_Os04g52970 | Os04g0620950 | - | Detail |
| C2H4g06453 | 4:27,161,719-27,162,621 | + | C1H4g13741 | CX4g035632 | LOC_Os04g52970 | Os04g0620950 | - | Detail |
| C2H4g05552 | 4:27,163,238-27,165,981 | + | C1H4g19711 | CX4g031737 | LOC_Os04g52970 | Os04g0621300 | - | Detail |
| C2H4g28372 | 4:27,172,075-27,172,786 | + | C1H4g13741 | CX4g035632 | LOC_Os04g52970 | Os04g0620950 | - | Detail |
| C2H4g13757 | 4:27,178,561-27,179,819 | + | - | - | - | - | - | Detail |
| C2H4g15342 | 4:27,181,934-27,185,137 | + | C1H4g13741 | CX4g035632 | LOC_Os04g52970 | Os04g0620950 | - | Detail |
| C2H4g28716 | 4:27,190,533-27,195,904 | + | C1H4g13741 | CX4g035632 | LOC_Os04g53030 | Os04g0621500 | - | Detail |
| C2H4g25773 | 4:27,196,753-27,201,847 | + | C1H4g13741 | CX4g035632 | LOC_Os04g53040 | Os04g0620950 | - | Detail |
| C2H4g09962 | 4:27,204,533-27,205,312 | + | C1H4g21467 | CX4g035632 | LOC_Os04g53040 | Os04g0623066 | - | Detail |
| C2H4g10009 | 4:27,204,884-27,206,764 | - | C1H4g30712 | - | - | - | - | Detail |
| C2H4g19695 | 4:27,265,589-27,272,232 | + | C1H4g28793 | CX4g031650 | LOC_Os04g53160 | Os04g0623066 | - | Detail |
| C2H4g18934 | 4:27,274,707-27,275,128 | + | C1H4g12019 | CX4g034955 | - | - | - | Detail |
| C2H4g04467 | 4:27,295,964-27,298,655 | + | C1H4g15103 | CX4g034497 | LOC_Os04g53160 | Os04g0623066 | - | Detail |
| C2H4g25020 | 4:27,315,533-27,318,015 | + | C1H4g11379 | CX4g034503 | LOC_Os04g53120 | Os04g0622600 | Xa1 | Detail |
| C2H4g17376 | 4:27,329,992-27,331,969 | + | C1H4g28793 | CX4g034662 | LOC_Os04g53160 | Os04g0623066 | - | Detail |
| C2H4g13136 | 4:27,354,474-27,359,579 | + | C1H4g15103 | CX4g034662 | LOC_Os04g53160 | Os04g0623066 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |